Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0203 ATGTCAGATGGTGGTGGTGGATGCAGCATAGTCTGGTTCAGAAGAGATCTGAGGATAGAGGACAATCCAGCACTGACAGCAGGAGTTAGAGCTGGTGCTGTGGTTCCAGTTTTCATATGGGCACCTGAAGAAGATGGTCAGTACTACCCTGGCAGGGTCTCTAGATGGTGGCTCAAACAAAGTTTGGCTCATCTTGATTCCTCTCTCAGGAATCTTGGCACTCCTCTCATCACTAAGCGATCCACTGATACTGTTTCTTCTCTACTTGAGGTTGTTAAGTCCACTGGAGCCACTCAAATCTTTTTTAATCATTTATATGATCCTCTGTCACTTGTCAGGGATCACCGAGCAAAGGAGGTTCTGAGTGGTCAGGGCATAACAGTACGTTCCTTCAACGCAGACTTATTATATGAACCATGGGATGTGAATGATGCACATGGCCGACCATTCACTACTTTTGCTGCTTTTTGGGAAAGATATCTTAGCATGCCTTATGACCCAGAGTCACCTCTTCTCCCACCTAAAAGGATAACTCCAGAAACAACTATGTGCTCTTTTCTTTTAACATGGCTGAAATGTCAAAACTCTTGTCCTATTTCAGGTGATGCATCAAGGTGCTCCTGTGATACATTGCTGTTTGAAGATGAATTGGAGAAGGCAAGCAATGCACTTCTAGCTCGAGCATGGTCACCGGGATGGAGCAATGCTAACAAGGCATTGACAGCATTCATAAATGGTCCACTGATAGAGTACTCAATAAACCGCAGGAAGGCAGACAGTGCCACTACCTCACTTCTCTCGCCCCATTTGCATTTTGGTGAGTTGAGTATCAAGAAAGTCTTCCATCTTGTCCGCATCAAACAAGTTCTGTGGGCTAACGAAGGAAACAAAGCTGGCGAAGAGAGCGTGAACTTGTTCCTCAAATCCATAGGCCTTAGAGAATACTCAAGGTACATTAGTTTCAACCACCCCTACAGTCATGAAAGGCCTCTTCTGGGGCACCTTAAGTTCTTTCCTTGGGTTGTAGACGAAGGGTATTTTAAGGGATGGAGACAAGGCAGAACTGGATACCCTTTGGTGGATGCTGGGATGAGGGAATTGTGGGCCACTGGTTGGTTGCATGATCGGATACGTGTTGTTGTTTCAAGTTTCTTTGTGAAGGTTCTGCAGCTTCCTTGGAGATGGGGAATGAAGTATTTCTGGGACACCCTTTTGGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAGTATATATCTGGTAGTCTCCCTGATGGTCGTGAAATTGACCGGATTGATAATCCACAGTTTGAGGGCTACAAATTCGACCCCAATGGAGAATATGTACGACGCTGGCTTCCAGAACTTGCAAGATTACCAACTGAGTGGATACATCATCCTTGGAATGCACCAGAATCAGTGCTACAAGCTGCTGGAATTGAGCTAGGAACGAACTATCCTCTTCCAATTGTGGGAATAGATGCAGCAAAAAACAGACTACTAGAAGCACTATCAGAAATGTGGCAACAAGAGGCAGCTTCAAGAGCTGCAATGGAAAATGGAACTGAGGAAGGACTTGGAGACTCTTCTGAATCAGCTCCTGCTGCTTTTCCTCAAGACACACAAATGGAGGAAACTCAAGAACCTGTTAGGAACAATCCCCCTCCTGTTGCTCGGCGCTACCAGGATCAGATGGTTCCAAGCATCACTTTCTCCCTGGTGAGAGTGGAAGAGGAAGAAACTTCTTCTGATCTTCAAAACTCGGCAGAAGAGAACAGCAGAGCTGAAGTGCCAGTAACTGTAAATGCACAACAAAATGCAGGAGCTACATTGAACGAACAGATGTTGCAGACTGCTCATAGGAATACACAAACACAATACAATACTATGATGGAGCAGCTGAGAAATGTGGCTGGAGATTCTGCAGGAGAATCTTCAAGTGGTACAAGGAGAGAAAGGGATGGAGGTGTAGTTCCAGAATGGTCTCCCCCAGCTTCTAGTTACTCAGAACATTTTGTAGGAGATGAAAATGGTATAACAAGCGGTTCATCTTACTTACAAAGGCATCCTCAGTCTCACCAAATGCTCAATTGGAGGCAGCTACCTCAGACTGGGTAA 2118 0.4542 MSDGGGGCSIVWFRRDLRIEDNPALTAGVRAGAVVPVFIWAPEEDGQYYPGRVSRWWLKQSLAHLDSSLRNLGTPLITKRSTDTVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEVLSGQGITVRSFNADLLYEPWDVNDAHGRPFTTFAAFWERYLSMPYDPESPLLPPKRITPETTMCSFLLTWLKCQNSCPISGDASRCSCDTLLFEDELEKASNALLARAWSPGWSNANKALTAFINGPLIEYSINRRKADSATTSLLSPHLHFGELSIKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVDEGYFKGWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGTNYPLPIVGIDAAKNRLLEALSEMWQQEAASRAAMENGTEEGLGDSSESAPAAFPQDTQMEETQEPVRNNPPPVARRYQDQMVPSITFSLVRVEEEETSSDLQNSAEENSRAEVPVTVNAQQNAGATLNEQMLQTAHRNTQTQYNTMMEQLRNVAGDSAGESSSGTRRERDGGVVPEWSPPASSYSEHFVGDENGITSGSSYLQRHPQSHQMLNWRQLPQTG 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0203 705 ProSitePatterns DNA photolyases class 1 signature 2. 375 394 IPR018394 -
Aed10g0203 705 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 215 511 IPR036134 -
Aed10g0203 705 PANTHER CRYPTOCHROME 7 623 IPR002081 -
Aed10g0203 705 MobiDBLite consensus disorder prediction 673 705 - -
Aed10g0203 705 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 9 181 IPR036155 -
Aed10g0203 705 MobiDBLite consensus disorder prediction 638 705 - -
Aed10g0203 705 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 324 525 - -
Aed10g0203 705 Gene3D - 136 316 - -
Aed10g0203 705 PRINTS DNA photolyase signature 414 428 IPR002081 -
Aed10g0203 705 PRINTS DNA photolyase signature 375 393 IPR002081 -
Aed10g0203 705 PRINTS DNA photolyase signature 355 371 IPR002081 -
Aed10g0203 705 PRINTS DNA photolyase signature 145 161 IPR002081 -
Aed10g0203 705 MobiDBLite consensus disorder prediction 577 596 - -
Aed10g0203 705 Pfam FAD binding domain of DNA photolyase 306 504 IPR005101 -
Aed10g0203 705 Pfam DNA photolyase 9 163 IPR006050 -
Aed10g0203 705 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 7 136 IPR006050 -
Aed10g0203 705 MobiDBLite consensus disorder prediction 513 559 - -
Aed10g0203 705 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 8 505 IPR014134 GO:0009785|GO:0009882
Aed10g0203 705 ProSitePatterns DNA photolyases class 1 signature 1. 355 367 IPR018394 -
Aed10g0203 705 MobiDBLite consensus disorder prediction 534 549 - -
Aed10g0203 705 Gene3D HUPs 10 229 IPR014729 -
Aed10g0203 705 PANTHER CRYPTOCHROME-1 7 623 - -
Aed10g0203 705 Pfam Blue/Ultraviolet sensing protein C terminal 533 650 IPR020978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0203 Aed-Chr10 1617081 1620540 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0203 K12118 - gmx:100797839 1285.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0203 10 1617081 1620540 Aed10g0203 10 1617081 1620540 ECH
Aed3g1658 3 21245299 21250380 Aed10g0203 10 1617081 1620540 PCT