Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1646 ATGATCAGAATACCCGAAAAGAACGCAATGTGGAACGAGGAGCTAGGAACATGGTTGACCGGGTTTCATAATCATCCTCATAATCACAATCCTAATGCTAATGCTAATGCTAATGCATTCAACAACAACAATAACAACAACAGTGTTTTCTCCAACGGGTTCCCAATGTGCGGCGATACCAACAACATGATCCATGATGTTGGTATTGATGTTGATGTGATGCTGTCTAATGATTTTGCTAGAATGAGTGTTTTTCATGAACAAGGGAATGCTGGTGCCAAAACCTATGGATATGGTGCTGCTAATGTTATGGACTCATCATCATACACACATGCATTCTCACCTTGTTCTTTGGATCCACATCCATATGCGTATGTTAGTGAAAAAATGGGTACTCCAATATCTACTTGGGGCGTGACACCTTCTTCTTCTGATGTGAAGGCACAGACTTTCGGAACCCCAATGGAGTCTTCTCTTACCCAAAGGAGGAGCACTTGTTATGGACACGTTCCACTGCAGCACCCATTTCATGCTACAGGGCCTTTTGATGATGTGAAAAACAAAACCCCCATTATGTTCTCTCAGAGTCAACAACCCAAGCTGGCTATGAATGTCAACACTCCACCATCACATTATTTCCCTGCAGCAAAAGAAAGGGTAGCTGCAACTGCAACTGCAATCCCCAATGGTGATTTTTCCCATTCTAGAGTGGACACTGTGGGGTTTCAATGTGATGGTGGCTTTATCCTGCAAGAGAAGGATGTGAAATGCTGTGTTGCTAGTAGAGGGTGTAATTCTATGTGGGGTTTCAAAGAGAGTTTACTACCTTCACCACTGGGAGAGGAACTTGAACTTGAACTTCCTGAACTCATTTCACCCCGTGTTGCTCCTCCTACTAGCTACATTTACCACCTGGCAAAGGATCAGAATGGATGTCGCTTGCTGCAGAGGATGGTTGATGAGGGCACCTCCGAAGACGTGATCATAGTGTTCAATGGAGTCATAGATGGTGTTGTTGAGCTCATGATGGACCCTTTTGGGAACTACCTTGTGCAAAAGTTGCTTGATGTGTGTGGAGAAGATGAGAGGTTGCAGGTTGTGTTAATGCTGACTAAAGAACCAGGGCAGCTAGTCAAAACCTCTTTGAATACACACGGGACTCGGGTGGTTCAGAAATTGATTGCGACTGTTGACTCTAGAAAACAGATTGCAATGCTGAGGTCTGCCATTCAACCTGGTTTTCTTGATCTTATTAAGGATCTGAATGGAAATCATGTCATTCAACGATGCTTGCAACACTTTAGCTCCAAAGATAATGAGTTTATTTTTGTTGCTGCTACAAAGTTTTGTGTTGACATAGCTACTCATCAACATGGGTGTTGTGTACTACAACGTTGCATTGATTATTCCACCGGAAAGTACCCAGATAAGCTGGTAAAGGAAATATGCAGACATGGGCTTCTCCTTGCTCAAGATCCATTTGGAAATTACGTTGTTCAGTATATTATAGAGATGGAGAATCCAAGTGCCTCATTCACACTGCATTCTCAGTTCAAAGGGAACTACGCCAACCTCTCCATGCAAAAATTTAGCAGTCATGTGGTTGAAAAATGCCTCTTGCATCTTGCAGAGAACAGGTCAAGGATAGTCCAAGAATTGTTGTCTTTTCCTCACTTTGAAAGGCTGCTACAAGACCCATATGCCAACTATGTTGTTCAACGTGCTCTCGGAGTCACCAAGGGCTCTCTGCATGCATCTCTAGCCGAAGCAGTTCGCCCCTACAAAATGTTGTGCACCAGCCCTTATTCCAAAAGGATTTTCTCAAGGAAGCTGCTTAACAAGTGA 1845 0.4341 MIRIPEKNAMWNEELGTWLTGFHNHPHNHNPNANANANAFNNNNNNNSVFSNGFPMCGDTNNMIHDVGIDVDVMLSNDFARMSVFHEQGNAGAKTYGYGAANVMDSSSYTHAFSPCSLDPHPYAYVSEKMGTPISTWGVTPSSSDVKAQTFGTPMESSLTQRRSTCYGHVPLQHPFHATGPFDDVKNKTPIMFSQSQQPKLAMNVNTPPSHYFPAAKERVAATATAIPNGDFSHSRVDTVGFQCDGGFILQEKDVKCCVASRGCNSMWGFKESLLPSPLGEELELELPELISPRVAPPTSYIYHLAKDQNGCRLLQRMVDEGTSEDVIIVFNGVIDGVVELMMDPFGNYLVQKLLDVCGEDERLQVVLMLTKEPGQLVKTSLNTHGTRVVQKLIATVDSRKQIAMLRSAIQPGFLDLIKDLNGNHVIQRCLQHFSSKDNEFIFVAATKFCVDIATHQHGCCVLQRCIDYSTGKYPDKLVKEICRHGLLLAQDPFGNYVVQYIIEMENPSASFTLHSQFKGNYANLSMQKFSSHVVEKCLLHLAENRSRIVQELLSFPHFERLLQDPYANYVVQRALGVTKGSLHASLAEAVRPYKMLCTSPYSKRIFSRKLLNK 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1646 614 ProSiteProfiles Pumilio RNA-binding repeat profile. 445 480 IPR001313 GO:0003723
Aed3g1646 614 ProSiteProfiles Pumilio RNA-binding repeat profile. 552 589 IPR001313 GO:0003723
Aed3g1646 614 ProSiteProfiles Pumilio RNA-binding repeat profile. 294 332 IPR001313 GO:0003723
Aed3g1646 614 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 614 - -
Aed3g1646 614 Gene3D - 298 614 IPR011989 -
Aed3g1646 614 ProSiteProfiles Pumilio RNA-binding repeat profile. 333 369 IPR001313 GO:0003723
Aed3g1646 614 Pfam Pumilio-family RNA binding repeat 488 505 IPR001313 GO:0003723
Aed3g1646 614 Pfam Pumilio-family RNA binding repeat 450 483 IPR001313 GO:0003723
Aed3g1646 614 Pfam Pumilio-family RNA binding repeat 521 554 IPR001313 GO:0003723
Aed3g1646 614 Pfam Pumilio-family RNA binding repeat 562 576 IPR001313 GO:0003723
Aed3g1646 614 Pfam Pumilio-family RNA binding repeat 414 443 IPR001313 GO:0003723
Aed3g1646 614 Pfam Pumilio-family RNA binding repeat 302 332 IPR001313 GO:0003723
Aed3g1646 614 Pfam Pumilio-family RNA binding repeat 338 367 IPR001313 GO:0003723
Aed3g1646 614 Pfam Pumilio-family RNA binding repeat 377 406 IPR001313 GO:0003723
Aed3g1646 614 SMART pum_5 554 589 IPR001313 GO:0003723
Aed3g1646 614 SMART pum_5 481 515 IPR001313 GO:0003723
Aed3g1646 614 SMART pum_5 333 368 IPR001313 GO:0003723
Aed3g1646 614 SMART pum_5 297 332 IPR001313 GO:0003723
Aed3g1646 614 SMART pum_5 372 407 IPR001313 GO:0003723
Aed3g1646 614 SMART pum_5 409 444 IPR001313 GO:0003723
Aed3g1646 614 SMART pum_5 445 480 IPR001313 GO:0003723
Aed3g1646 614 SMART pum_5 517 551 IPR001313 GO:0003723
Aed3g1646 614 CDD Pumilio 302 609 IPR033712 GO:0003723
Aed3g1646 614 ProSiteProfiles Pumilio RNA-binding repeat profile. 372 407 IPR001313 GO:0003723
Aed3g1646 614 SUPERFAMILY ARM repeat 297 608 IPR016024 -
Aed3g1646 614 ProSiteProfiles Pumilio RNA-binding repeat profile. 481 516 IPR001313 GO:0003723
Aed3g1646 614 PANTHER PUMILIO-FAMILY RNA-BINDING REPEATPROTEIN 36 614 - -
Aed3g1646 614 ProSiteProfiles Pumilio RNA-binding repeat profile. 409 444 IPR001313 GO:0003723
Aed3g1646 614 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 262 614 IPR033133 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1646 Aed-Chr3 21085225 21089903 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1646 - - gmx:100788865 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1646 3 21085225 21089903 Aed3g1646 3 21085225 21089903 ECH
Aed3g1646 3 21085225 21089903 Aed10g0212 10 1692770 1695874 PCT