Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0212 ATGGACGACTCCTCCACCAGAATGCTGAAGATGTCAGACGACAACAAGCGAAACGCAGCAGCAGAAACGAGGTTCGTTGCTGGGATTCCCAATGCACCCACAACACCGTGTCTCCGCGTCCTTCACCCTGACCACGTGGCCGTTGGTTCCCCCATTGCCAGGGTTCCTCTCGCTCCTTCTCCCTCTCACGGCCCAGACCCGAACTGGGCTCTCGCCAACGATTTCTCCGCAATCAACCTCTGCGATGGAACCGGAACCGACCCTTACGCTTCTTCCTATTTCAATCAATCAGAAACCCTCCCCTACCATCATCTTAACAACACCCAAAACAATAACATTCAGCCTTTCGACCCTTACGCTTCTTCCTATTTCAATGAAACAGGAAATCTCCCCTATCATCATCTTAACAACACCCAAACCAATAACATTGCATTGGACCCCTACCCCTACGCTTCCTATTTCAATGAAACAGGATCCCTCCCCTATCATCACCACCACCATGTTAACAATCTGGCCTTATTCGATAATAATAATAATAATAATAAAGGCTACACTTTTACCACCCCAGATGATCACGCCAGCCACGTGTATCATCACCTCGTCGACCAGAGGAGGAAGCAGCTACAAGACACAACTGATAATAACTATCAGATTCTCCGCGATCGCTATATGGCTTCACAGTCTCTCACTGCAGGAGCCAAAAGCCCCATTAGGTTTTCTCCCAATGCCAATATTAACCCATCACAATATTACGTTGCCGCAAAAGAAAAAGCTGAACTTTCGGCTCCTTTTCTATTTCCAAGGAGAATGGGGGAAGACCCTTCTGCAGCTTATAGGTATGATAATGGTGTTATCCTACAAGGGAGAGATGCAAAACAATACTCTGGGAACGGCTACAGTTCTTATAGAAGGACTACTCGTGATGCTGCTGCTGCATTTCATGGTTTGGGTGGTGGGAGTGTTTCTTCTAAGAACTATAATTCTGGTCAAAGAAGTTGTGGTGGCGATTTCTCGCTGCCCATGCTGCTGAATTTTTATTCTGTGCCTGACGCGCAGTGCTACATTTACAACCTGGCAAAAGATCAAAACGGTTGTCGTTTTCTGCAGCGAATGGTGGATGAGGGGTCCTACCAAGATATTTGTATGGTATTCGAGGGAATCATTGGGAACGTTGTTGAACTTATGATAGACTCTTTCGGGAATTATCTTGTTCAGAAGCTGCTCGATGTTTGCACCGATGATCAACGGCTCCAGATTGTGCTCATGCTTACCAATCAACCAGGCCAGCTCGTTAGAATCTCTTTAAATACTCACGGCACACGCGTGGTGCAGAAGTTGATTGAGACCCTCACCTCCGCGGAACAAGTTTCATTGGTGAAGTCTGCCATTCGACCGGGTTTTCTTGATCTTATTAAGGATCTGAATGGAAATCACGTCATTCAACGTTGCTTGCAATGCCTTAGCTGTCAAGATAATCAGTTTATTTTTGATGCTGCTGTGAAGTTTTGTCTTGAAATAGCTACTCATCAGCATGGATGTTGTGTACTGCAACGTTGCATTCAAAACTCAGTAGGAAAGAATCGGGACAAGCTGCTCACAGAAATATGCAAGCATGGACTTCTCCTCGCTCAGGATCCATTTGGAAATTATGTTGTTCAGTATGTTATAGAGTCGGATACCCCAGCTGTGACAGTCAAACTGCTTAGTCAGTTCAAAGGGAACTTTGTAAATATGTCTACACAGAAATTCAGCAGTCATGTGGTAGAAAAATGTCTTAAGCATGTTGGAGAAAGTAGGCCAAGGATAATTCGAGAATTTCTGTCTGTTCCTCGCTTTGAACAGTTGTTGCAAGACCCATATGCCAACTATGTCATTCAATCTGCTCTACTTTTTACAAAGGGCCCTCTGCATGCATCTTTGGCTGAAACAACTCGTAATCACAAAATCTTGCGCACTAGTCCATATTGTAAGAGGATTTTCTCTGGAAGCTTGCTCAAGAAGTGGTGA 2007 0.4504 MDDSSTRMLKMSDDNKRNAAAETRFVAGIPNAPTTPCLRVLHPDHVAVGSPIARVPLAPSPSHGPDPNWALANDFSAINLCDGTGTDPYASSYFNQSETLPYHHLNNTQNNNIQPFDPYASSYFNETGNLPYHHLNNTQTNNIALDPYPYASYFNETGSLPYHHHHHVNNLALFDNNNNNNKGYTFTTPDDHASHVYHHLVDQRRKQLQDTTDNNYQILRDRYMASQSLTAGAKSPIRFSPNANINPSQYYVAAKEKAELSAPFLFPRRMGEDPSAAYRYDNGVILQGRDAKQYSGNGYSSYRRTTRDAAAAFHGLGGGSVSSKNYNSGQRSCGGDFSLPMLLNFYSVPDAQCYIYNLAKDQNGCRFLQRMVDEGSYQDICMVFEGIIGNVVELMIDSFGNYLVQKLLDVCTDDQRLQIVLMLTNQPGQLVRISLNTHGTRVVQKLIETLTSAEQVSLVKSAIRPGFLDLIKDLNGNHVIQRCLQCLSCQDNQFIFDAAVKFCLEIATHQHGCCVLQRCIQNSVGKNRDKLLTEICKHGLLLAQDPFGNYVVQYVIESDTPAVTVKLLSQFKGNFVNMSTQKFSSHVVEKCLKHVGESRPRIIREFLSVPRFEQLLQDPYANYVIQSALLFTKGPLHASLAETTRNHKILRTSPYCKRIFSGSLLKKW 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0212 668 ProSiteProfiles Pumilio RNA-binding repeat profile. 386 422 IPR001313 GO:0003723
Aed10g0212 668 Pfam Pumilio-family RNA binding repeat 355 388 IPR001313 GO:0003723
Aed10g0212 668 Pfam Pumilio-family RNA binding repeat 390 420 IPR001313 GO:0003723
Aed10g0212 668 Pfam Pumilio-family RNA binding repeat 429 459 IPR001313 GO:0003723
Aed10g0212 668 Pfam Pumilio-family RNA binding repeat 467 497 IPR001313 GO:0003723
Aed10g0212 668 Pfam Pumilio-family RNA binding repeat 614 628 IPR001313 GO:0003723
Aed10g0212 668 Pfam Pumilio-family RNA binding repeat 503 536 IPR001313 GO:0003723
Aed10g0212 668 Pfam Pumilio-family RNA binding repeat 574 597 IPR001313 GO:0003723
Aed10g0212 668 Pfam Pumilio-family RNA binding repeat 541 567 IPR001313 GO:0003723
Aed10g0212 668 CDD Pumilio 344 661 IPR033712 GO:0003723
Aed10g0212 668 ProSiteProfiles Pumilio RNA-binding repeat profile. 350 385 IPR001313 GO:0003723
Aed10g0212 668 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 96 667 - -
Aed10g0212 668 SUPERFAMILY ARM repeat 352 660 IPR016024 -
Aed10g0212 668 ProSiteProfiles Pumilio RNA-binding repeat profile. 570 605 IPR001313 GO:0003723
Aed10g0212 668 SMART pum_5 386 421 IPR001313 GO:0003723
Aed10g0212 668 SMART pum_5 570 604 IPR001313 GO:0003723
Aed10g0212 668 SMART pum_5 425 460 IPR001313 GO:0003723
Aed10g0212 668 SMART pum_5 534 569 IPR001313 GO:0003723
Aed10g0212 668 SMART pum_5 462 497 IPR001313 GO:0003723
Aed10g0212 668 SMART pum_5 498 533 IPR001313 GO:0003723
Aed10g0212 668 SMART pum_5 607 642 IPR001313 GO:0003723
Aed10g0212 668 SMART pum_5 350 385 IPR001313 GO:0003723
Aed10g0212 668 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 321 667 IPR033133 GO:0003723
Aed10g0212 668 ProSiteProfiles Pumilio RNA-binding repeat profile. 462 497 IPR001313 GO:0003723
Aed10g0212 668 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 96 667 - -
Aed10g0212 668 ProSiteProfiles Pumilio RNA-binding repeat profile. 425 460 IPR001313 GO:0003723
Aed10g0212 668 Gene3D - 343 665 IPR011989 -
Aed10g0212 668 ProSiteProfiles Pumilio RNA-binding repeat profile. 498 533 IPR001313 GO:0003723
Aed10g0212 668 ProSiteProfiles Pumilio RNA-binding repeat profile. 534 569 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0212 Aed-Chr10 1692770 1695874 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0212 - - gmx:100784921 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0212 10 1692770 1695874 Aed10g0212 10 1692770 1695874 ECH
Aed3g1646 3 21085225 21089903 Aed10g0212 10 1692770 1695874 PCT