Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1644 ATGGAAATGAAGGCAAAGAACAGCAACAAGAAAGTGGGGAGTGAACTGGGTTGTGGTCTCATGGGGAGGATTCTCCACCTCAAAAGCCACAAGATGAGAAAAGCTTCTGTTCACTCCCTACCCTTGAAGAATTCACACAGTGACAACGATGATGTCAAAAGTGATGAACCTAAGAAGACCCCAAATGAAGAATCAAAGGTTGCAAGAAAGAGTGTCTCCATTCACCAACAACAACCTTGTACAAATCGAAACAGTACTCAACACCAGAGGCATTCAGATGTTGCTGCTGCAAGAAGCTCAACATCATCTTCTTCCACTAGTACTTTTTCAACTTCATCTCACACTAAGGTTCAAGTTCAACAAAACAAGGACAAGAATTCTCTTGCACTTGCTAGGATAAGCACTGGCAATGAGAACAAGAGCTCTCAGTTGAAACTCACTGGGAATTTGCTTGTGAATAACACCCCAAGAAGGAAGAGTGTGGAGTACATGCCTAAAAATGCAGACTTGAACTCTGTTTACACCAATGCAAGCAAAGGTTTGATGGGGAATATCATGAGGAGGAACAGCAACGGGAACGAGGTTGCGCAGTTTTTGAGTCCAAGGCTGAGAAAAATGGACCCTGAGGCGTTGAAAACCATGGGAAATGATGCATATAAGCATGGAAGATTCGAAGAAGCTTTGGCTTTGTATGATCGAGCAATTGTACTTGATTCAAATAAGGCAATATATCATTGCAACAAAAGTGCCGCTTTAATCGCCTTAGGAAGGCTTCAAGAAGCAATTCTTGAGTGTGAGGAATCTATCAAGCTGGACCCTTCTTATGTCAGAGCACACAACCGTTTGGCCACAGTATATTTCAGGTTGGGAGAAGCAGAAAAGGCACTGGATTGCAATCAGTCAACACCATATGCTGATTCAATGCTTACTTTCCAAGCTCAGGCTCTTCAAAATCACCTTAAAAAATGCATAGAAGCGCGAAAAGTCAACGCGTGGAGTGATATACTAAAGGAAACACAGTCTGCAATATCCTTAGGTGCTGATTCTTCTCCACAGGTCAACGCTTTGCAAACTGAAGCCTTGCTGAAGCTCCTAAGATATCAAGAGGCCTATGTCATCTATGATAAAATGCCAAAATTTTCACTTGATTGGTGTACCAAGATGTTTGGCGTGTCTTGCAGCGCTTACCTGTTGTTGATAGGATCACAGATTTACTTGGCAGCCGGAAGGTTTGAGGAAGCTGTGGCATCAGCTCAGCAAGCAGCCAAAGTTGATCCAGGGAATAGAGAGGTGAATGCAATGGTAAGGAGGGCCAGAGCAGCAACATCAGCTAGAATGAGTGGAAACTTGCTCTTCAAAGCATCGAAATTCACTGAAGCATGTGGCGTGTACAACGAAGGCCTAGAACACGATCCACACAACTCAGTTCTGCTATGCAACAGAGCTGCATGTCGTTCTAAGCTTGGACAATATGAGAAAGCAATTGAAGATTGTAACACGGCACTTATGGTTCAGCCAGGTTATAGCAAAGCAAGGTTAAGGAGGGCAGATTGCAATGCCAAGTTGGAACGGTGGGAAGCTTCTATTCAAGACTATGAGATGCTACTAAGAGAAAGGCCAGGGGATGAGGAAGTGGCAAGGGCTTTGTTTGAAGCTCAGCTCCAACTAAAGATGCTGCGTGGTGAAGATATTAAGGACTTGAAATTTGGTTCAAACTTGGTTTCCATCTCAAGTAATGATCGGTTCAGACATTATGTGACCTCACCTGGTATGGCTGTGGTTCTCTTTAGCAACAAGGCAACCCAAAAGAAAGTTTTACTTGTGTTGGAGCAAATCAGCAAGAGATTCCCATCAGTGGAAATCGAAGACCACCCCTACTTAGCAAAGTCAGAAGGTGTGATCTCTACTCCAGCCTTCAAAATATACAAGAACGGATCAAGGGTTAAAGAAGTCTCAGGCAACAATCACGAGTTGTTAGAAAGATCAGTTAAAATGTACAGCAGCTGA 2007 0.434 MEMKAKNSNKKVGSELGCGLMGRILHLKSHKMRKASVHSLPLKNSHSDNDDVKSDEPKKTPNEESKVARKSVSIHQQQPCTNRNSTQHQRHSDVAAARSSTSSSSTSTFSTSSHTKVQVQQNKDKNSLALARISTGNENKSSQLKLTGNLLVNNTPRRKSVEYMPKNADLNSVYTNASKGLMGNIMRRNSNGNEVAQFLSPRLRKMDPEALKTMGNDAYKHGRFEEALALYDRAIVLDSNKAIYHCNKSAALIALGRLQEAILECEESIKLDPSYVRAHNRLATVYFRLGEAEKALDCNQSTPYADSMLTFQAQALQNHLKKCIEARKVNAWSDILKETQSAISLGADSSPQVNALQTEALLKLLRYQEAYVIYDKMPKFSLDWCTKMFGVSCSAYLLLIGSQIYLAAGRFEEAVASAQQAAKVDPGNREVNAMVRRARAATSARMSGNLLFKASKFTEACGVYNEGLEHDPHNSVLLCNRAACRSKLGQYEKAIEDCNTALMVQPGYSKARLRRADCNAKLERWEASIQDYEMLLRERPGDEEVARALFEAQLQLKMLRGEDIKDLKFGSNLVSISSNDRFRHYVTSPGMAVVLFSNKATQKKVLLVLEQISKRFPSVEIEDHPYLAKSEGVISTPAFKIYKNGSRVKEVSGNNHELLERSVKMYSS 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1644 668 ProSiteProfiles TPR repeat profile. 395 428 IPR019734 GO:0005515
Aed3g1644 668 ProSiteProfiles TPR repeat profile. 208 241 IPR019734 GO:0005515
Aed3g1644 668 MobiDBLite consensus disorder prediction 44 70 - -
Aed3g1644 668 CDD TRX_family 582 655 - -
Aed3g1644 668 MobiDBLite consensus disorder prediction 32 124 - -
Aed3g1644 668 Pfam Tetratricopeptide repeat 403 474 - -
Aed3g1644 668 Pfam Tetratricopeptide repeat 214 274 - -
Aed3g1644 668 Gene3D Glutaredoxin 567 667 - -
Aed3g1644 668 SMART tpr_5 509 542 IPR019734 GO:0005515
Aed3g1644 668 SMART tpr_5 242 275 IPR019734 GO:0005515
Aed3g1644 668 SMART tpr_5 394 428 IPR019734 GO:0005515
Aed3g1644 668 SMART tpr_5 276 308 IPR019734 GO:0005515
Aed3g1644 668 SMART tpr_5 441 474 IPR019734 GO:0005515
Aed3g1644 668 SMART tpr_5 208 241 IPR019734 GO:0005515
Aed3g1644 668 SMART tpr_5 475 508 IPR019734 GO:0005515
Aed3g1644 668 MobiDBLite consensus disorder prediction 71 124 - -
Aed3g1644 668 Gene3D Tetratricopeptide repeat domain 206 560 IPR011990 GO:0005515
Aed3g1644 668 Pfam Tetratricopeptide repeat 477 508 IPR001440 GO:0005515
Aed3g1644 668 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 7 667 - -
Aed3g1644 668 SUPERFAMILY TPR-like 202 549 IPR011990 GO:0005515
Aed3g1644 668 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 7 667 IPR044534 -
Aed3g1644 668 Coils Coil 515 535 - -
Aed3g1644 668 SUPERFAMILY Thioredoxin-like 574 654 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1644 Aed-Chr3 21051214 21055502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1644 202 511 Glycosyltransferase AT3G04240 21.222 3.24e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1644 K09527 - gmx:100791862 1090.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1644 3 21051214 21055502 Aed3g1644 3 21051214 21055502 ECH
Aed3g1644 3 21051214 21055502 Aed10g0216 10 1729564 1733038 PCT