Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1625 ATGGGTTCTTTGTTTAGTATGGCTAATAATACCAAGGCCAATAATCAAAGTGAGTCCAGTGAAATCTCTCCAAATGAGACCAGCAAGAGGCAAAGAATGTCACCTGACTCAGTGATTGAAGAATGTCCAAGACTTATTCCTAATCTCCCTGATGAGTTATCCCTTCAGATTATTGCTAGACTTCCTCGAATTTGTTACCACCGAGTAAGGCTGGTGTCTAAGAAGTGGAAAGCAACTATCACGAGTTCAGAATTATATAAAGTTAGAAAAGAGCTTGGAACAACTGAAGAGTGGCTATATCTGTTGGTCAGGACTGGACAAAATAAACTCCTATGGCATGTTCTAGACCCCCGTTCTCGAATATGGCAGAGGCTTCCTATTATGCCCATGCCCAGTGTTGTCGATGAAGAAGTCTCTTCTTCTAGGCTTTGGATGTGGAACATGGTAGAAGGTATCAGAATTGCTGAAATTATCAGAGCTTTGCTTGGACAGAAGGATGCATTGGATGACATGCCCTTTTGTGGTTGTGCTTTTGGAGTTGTTGATGGATGTCTTTATGCTATAGGTGGATTCTGTAAAGCTTCAACTATGAAATGTGTCTGGCGGTTTGATCTGGTACAAAATGTGTGGAAGAAGGTGAATTCTATGTCTACAGGTAGAGCATATTGTAAGACAGGAATCTTAAATAACAAGCTTTATGTTGTTGGAGGGGTTAGTCAAGGCCAAGCTGGATTGAATCCTCTTCAATCTGTTGAAGTTTTTGACCCTGTCACGGATGCTTGGTCTGATGTACCTAGTATGCCGTTCTCAAGAGCCGGAGTTCTGCCAACAGCATTTTTGGCTGACATGTTAAAGCCTATTGCCACTGGGTTAACCTCGTACAAGGGAAGGTTATATGTTCCTCAAAGTTTGTATTCATGGCCCTTTTTTGTTGATGTTGGGGGAGAGATATATGATCCTGAAACAAATGCATGGATGGAAATGCCAGATGGAATGGGTGAAGGGTGGCCTATTAAGCAGGCAGGAACCAAATTGAGTGTTGTAGTGAATGGTGAGTTATATGCTTTTGATCCTTCAAATTCTGTGGATAGTGGAAGGATCAAGGTATATGATCAAGGAGAGGATGCATGGAAAGTTGTTGCTGGGAAGGTTCCTGTATATGATTTTACTGAATCAGAGTCTCCATATCTACTAGCTGGTTTTCATGGAAAGCTTCATTTCATTACAAAAGATGCCAATCATGATATTGCTGTTTTTCAGTGCAGCAATTTGGATTCTTCACCATCAACCTCAACACCTCAATCATCCAAATCCATGCAGGATGAATTGTTGCAAGAATCAGCTGAGACAGATGAAGTTGTTTGGCAATTAGTTGCAAGTAAGGGTTTTGGGCAGACTGAACTGATCAATTGCCAAGTTATTGACATCTAG 1431 0.4123 MGSLFSMANNTKANNQSESSEISPNETSKRQRMSPDSVIEECPRLIPNLPDELSLQIIARLPRICYHRVRLVSKKWKATITSSELYKVRKELGTTEEWLYLLVRTGQNKLLWHVLDPRSRIWQRLPIMPMPSVVDEEVSSSRLWMWNMVEGIRIAEIIRALLGQKDALDDMPFCGCAFGVVDGCLYAIGGFCKASTMKCVWRFDLVQNVWKKVNSMSTGRAYCKTGILNNKLYVVGGVSQGQAGLNPLQSVEVFDPVTDAWSDVPSMPFSRAGVLPTAFLADMLKPIATGLTSYKGRLYVPQSLYSWPFFVDVGGEIYDPETNAWMEMPDGMGEGWPIKQAGTKLSVVVNGELYAFDPSNSVDSGRIKVYDQGEDAWKVVAGKVPVYDFTESESPYLLAGFHGKLHFITKDANHDIAVFQCSNLDSSPSTSTPQSSKSMQDELLQESAETDEVVWQLVASKGFGQTELINCQVIDI 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1625 476 Gene3D - 44 99 - -
Aed3g1625 476 SMART kelc_smart 231 281 IPR006652 GO:0005515
Aed3g1625 476 SMART kelc_smart 184 230 IPR006652 GO:0005515
Aed3g1625 476 ProSiteProfiles F-box domain profile. 43 89 IPR001810 GO:0005515
Aed3g1625 476 Pfam Kelch motif 172 217 IPR006652 GO:0005515
Aed3g1625 476 Pfam Kelch motif 220 268 IPR006652 GO:0005515
Aed3g1625 476 SMART fbox_2 49 89 IPR001810 GO:0005515
Aed3g1625 476 SUPERFAMILY Kelch motif 101 386 IPR015915 GO:0005515
Aed3g1625 476 Pfam F-box domain 47 86 IPR001810 GO:0005515
Aed3g1625 476 Gene3D - 111 389 IPR015915 GO:0005515
Aed3g1625 476 SUPERFAMILY F-box domain 45 93 IPR036047 GO:0005515
Aed3g1625 476 MobiDBLite consensus disorder prediction 1 36 - -
Aed3g1625 476 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 4 476 - -
Aed3g1625 476 PRINTS Kelch repeat signature 229 242 - -
Aed3g1625 476 PRINTS Kelch repeat signature 250 264 - -
Aed3g1625 476 PRINTS Kelch repeat signature 428 440 - -
Aed3g1625 476 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 4 476 - -
Aed3g1625 476 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1625 Aed-Chr3 20813174 20816520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1625 49 266 Miscellaneous Gene Families AT4G33900 27.426 1.52e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1625 - - gmx:100815614 845.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1625 3 20813174 20816520 Aed3g1625 3 20813174 20816520 ECH
Aed3g1625 3 20813174 20816520 Aed10g0239 10 1941631 1946789 PCT