Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0239 ATGGCAAGGGTGGTTGTGAATATGGGCGCACTTTTTAGTGTGGTGAGTACAAAACCTGACCAAAGGGAATGTAATGAAATCTCTCCAAATGAGACAAGTAAGAGGCAAAGAATGTCACCTACTGTTGATGAAGAGAGTCCAAGGCTAATTCCTAATCTCCCTGATGAGTTATCACTTCAGATTATAGCTAGACTTCCTAGAATTTGTTACTTCAATATAAGGCTGGTATCAAAGAGGTGGAAGTCAACTATCATGAGTTCGGAATTGTATAAATTAAGAAAGGAACTTGGGACAACTGAAGAGTGGCTATATCTGTTGGTTAAGGTTGGAGAAAATAATCTTCTGTGGCATGCTCTAGATCCTCGTTCTAATATATGGCAGAGAGTGCCTAATATGCCCAACTTTGTTAATGAAGAAGAACCTAAAAAAGGTTCTTCTAGGCTTTGGGTGTGGAACATGGTGGAGGGTATCAGAATTGCTGAAGTTATTAGAGGCTTTCTTGGACAGAAGGATGCATTTGATGAAATGCCCTTTTGCGGTTGTGCAATTGGAGCTGTTGATGGATGTCTTTATGTTCTTGGTGGATTCTCTAAAGCTTCAACTATGAGATGTGTCTGGCGATTTGATCCGATACAAAATACGTGGAGCAAGTTGACTCCTATGTCCACGGGTCGGGCATACGGTAAGACAGGCATCTTAAATAACAAGCTTTATGTTGTTGGAGGGGTTAGTCAAGGTCAAGCTGGATTGGTTCCTCTCCAATCTGTTGAAGTTTTCGACCCCTCTACAGATACATGGTCACATGTACCTAGTATGCCATTCTCTAGAGCTCAAGTCCTGCCCAATGCTTTTTTGGCTGACATGTTAAAGCCAATTGCCACAGGGTTAACCTCATACATGGGAAGATTATGTGTTCCACAGAGTCTGTATTCATGGCCCTTTTTTGTTGATGTTGGTGGAGAAATCTATGATCCTGAAACTAACTCGTGGATAGAAATGCCAGCTGGAATGGGTGAGGGATGGCCTGCACGGCAGGCAGGTACCAAATTGAGTGTTGTAGTGGATGGTGAATTATATGCTTTTGACCCTTCGAGTTCTATGGATAGTGGAAGGATCAAGGTATATGATCAAGGTGAAGATGCTTGGAAAATAGTTATTGGAAAAGTCCCCATATATGATTCTGCTGATTCAGAGTCTCCATATCTACTTGCTGGTTTCCATGGAAAGCTTCATGTCATTACCAAAGATGCCAATCATGACATTGCGGTTCTGCAGGCTGGCCTGCGTGATAATTTGGAATCTTCACCATCGCTCTCAACTCTGTCACAAAGTAGTACATTGCAAGAATCTCCAGAACTGGCTGCCGAATCAGATGCAGCAGTTGTTTGGAGGGTAGTTGCAAGCAGGGATTTTGGGCAGGCTGAACTAGTCAGCTGCCAAAAGCAGAACTTAGAGATCAGGCACGACTATAGATGTGGCAACTCAGACCAGGAAAATGCAAAAGCTATCTATGTTCCCTAG 1521 0.428 MARVVVNMGALFSVVSTKPDQRECNEISPNETSKRQRMSPTVDEESPRLIPNLPDELSLQIIARLPRICYFNIRLVSKRWKSTIMSSELYKLRKELGTTEEWLYLLVKVGENNLLWHALDPRSNIWQRVPNMPNFVNEEEPKKGSSRLWVWNMVEGIRIAEVIRGFLGQKDAFDEMPFCGCAIGAVDGCLYVLGGFSKASTMRCVWRFDPIQNTWSKLTPMSTGRAYGKTGILNNKLYVVGGVSQGQAGLVPLQSVEVFDPSTDTWSHVPSMPFSRAQVLPNAFLADMLKPIATGLTSYMGRLCVPQSLYSWPFFVDVGGEIYDPETNSWIEMPAGMGEGWPARQAGTKLSVVVDGELYAFDPSSSMDSGRIKVYDQGEDAWKIVIGKVPIYDSADSESPYLLAGFHGKLHVITKDANHDIAVLQAGLRDNLESSPSLSTLSQSSTLQESPELAAESDAAVVWRVVASRDFGQAELVSCQKQNLEIRHDYRCGNSDQENAKAIYVP 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0239 506 Gene3D - 116 391 IPR015915 GO:0005515
Aed10g0239 506 Pfam F-box domain 51 90 IPR001810 GO:0005515
Aed10g0239 506 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 10 481 - -
Aed10g0239 506 Gene3D - 48 103 - -
Aed10g0239 506 SMART fbox_2 53 93 IPR001810 GO:0005515
Aed10g0239 506 SMART kelc_smart 189 235 IPR006652 GO:0005515
Aed10g0239 506 SMART kelc_smart 236 282 IPR006652 GO:0005515
Aed10g0239 506 ProSiteProfiles F-box domain profile. 47 93 IPR001810 GO:0005515
Aed10g0239 506 Pfam Kelch motif 225 273 IPR006652 GO:0005515
Aed10g0239 506 Pfam Kelch motif 177 222 IPR006652 GO:0005515
Aed10g0239 506 MobiDBLite consensus disorder prediction 22 47 - -
Aed10g0239 506 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 10 481 - -
Aed10g0239 506 SUPERFAMILY F-box domain 46 151 IPR036047 GO:0005515
Aed10g0239 506 SUPERFAMILY Kelch motif 105 413 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0239 Aed-Chr10 1941631 1946789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0239 43 271 Miscellaneous Gene Families AT4G33900 27.966 2.18e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0239 - - gmx:100806691 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0239 10 1941631 1946789 Aed10g0239 10 1941631 1946789 ECH
Aed3g1625 3 20813174 20816520 Aed10g0239 10 1941631 1946789 PCT