Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0866 ATGGTGGGCACAAAGCTGAGTCTTTTACTGTGTGTTTGGATTTTGCTGTTGGGGTGTTGTGTCGGTAGGTTTGTGGTGGAGAAGAACAGTTTGAGAGTGACTTCGCCCAAATCGTTGAAGGGTACATATGAATGTGCAATTGGGAATTTTGGGGTTCCCAAGTACGGTGGAACATTGGTTGGTTCTGTGTTGTACCCAAAGGTGAATCAGAAAGGGTGCACCAACTTCAGTGATGTCAATTTTCAGTCCAAGCCAGGAGGGCTTCCCACCTTTCTTCTTGTTGATCGTGGAGATTGCTACTTCACTTTGAAGGCGTGGAATGCACAGAATGGTGGAGCAGCAGCTATTCTTGTAGCTGATGACAAGGTAGAAACATTGATCACTATGGACACTCCTGAAGAGGGGAAAGCAAATGAAGATTATGTGGACAAGATTAGTATTCCTTCTGCTCTTATCAGCAAATCCCTGGGGGATAGCATCAAGCAGGCTCTCTCTGATGGGGAGATGGTTGACATGAATCTTGATTGGAGAGAGTCTCTTCCACATCCTGATGATAGAGTTGAGTATGAGTTATGGACAAATAGCAACGATGAGTGCGGGCCAAAGTGTGATAGTCTAATTAATTTTCTGAAGGACTTTAAAGGGGTAGCTCAGCAGCTGGAGAAGAAAGGGTTCACTCAATTTACCCCTCGCTATATAACTTGGTTTTGTCCTGAAGCATTTATCTCGAGCAAACAGTGCAAATCTCAGTGCATAAACAATGGAAGGTACTGTGCTCCAGATCCTGAGCAAGATTTCAGTAAAGGGTATGATGGCAAAGATGTTGTTGTTCAAAACTTACGCCAAGCTTGCTTCTATAAAGTGGCAAATGAAAGTGGAAAGCCTTGGCAATGGTGGGACTATGTTACTGATTTTTCAATTCGTTGCCCCATGAAAGAGAATAAGTACACAGAAGAATGCTCAGATCAAGTTATTAAATCTCTTGGTGCTGATCTGAAGAAGATTAAAGACTGTGTTGGAGATCCCCATGCAGATGTAGAAAATCCTGTTCTTAAGGCTGAACAGGATGCACAGATTGGTAAAGGCACTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATAAACAACAGACAGTATCGAGGTAAGTTGTCAAGACCTGCTGTTCTCAAGGCAATGTGTTCAGGCTTCCTAGAGACCACTGAACCAACAATTTGCTTAACTTCAGACCTGGAAACAAATGAGTGTTTGGATAACAATGGTGGTTGTTGGCAAGAAAAATCTTCTAACATTACTGCATGCAGGGACACTTTCCGAGGAAGAGTATGTGAATGCCCTATTGTACAAAATGTGAAATTTGTTGGAGATGGATATACCCACTGTGAAGCTTCAGGATCCTTGAGTTGTGAATTCAACAATGGTGGTTGTTGGAAGGGAGCCCAAGGTGGCAGGGCTTACTCAGCTTGTCTTGATGACTATAGAAAAGGTTGTACATGTCCACCCGGGTTCAAAGGTGATGGAGTTCAGTCATGTGAAGATATTGATGAGTGCAAAGAGAAAACGGCCTGTCAATGCCCAGGTTGCACATGCAAAAACACCTGGGGGAGTTACGAGTGCAAATGCAAAAGTGGTTTGTTCTACTCACGAGTAAACGACGCGTGTTTTGGTAAATATTCTTCTACTTCAGTGGTGAATATCTGGTTGATTATCCTCGTCTTGGCTATTGCTGTTGCTGGAGGATATGCATTTTATAAGTACAGAATCCAGAGATATATGGATTCGGAGATACGGGTAATTATGGCCCAATACATGCCTTTGGATAATCAACCTGAGGGTTCTAATCAAGTTCATCACAATATCTAA 1863 0.4278 MVGTKLSLLLCVWILLLGCCVGRFVVEKNSLRVTSPKSLKGTYECAIGNFGVPKYGGTLVGSVLYPKVNQKGCTNFSDVNFQSKPGGLPTFLLVDRGDCYFTLKAWNAQNGGAAAILVADDKVETLITMDTPEEGKANEDYVDKISIPSALISKSLGDSIKQALSDGEMVDMNLDWRESLPHPDDRVEYELWTNSNDECGPKCDSLINFLKDFKGVAQQLEKKGFTQFTPRYITWFCPEAFISSKQCKSQCINNGRYCAPDPEQDFSKGYDGKDVVVQNLRQACFYKVANESGKPWQWWDYVTDFSIRCPMKENKYTEECSDQVIKSLGADLKKIKDCVGDPHADVENPVLKAEQDAQIGKGTRGDVTILPTLVINNRQYRGKLSRPAVLKAMCSGFLETTEPTICLTSDLETNECLDNNGGCWQEKSSNITACRDTFRGRVCECPIVQNVKFVGDGYTHCEASGSLSCEFNNGGCWKGAQGGRAYSACLDDYRKGCTCPPGFKGDGVQSCEDIDECKEKTACQCPGCTCKNTWGSYECKCKSGLFYSRVNDACFGKYSSTSVVNIWLIILVLAIAVAGGYAFYKYRIQRYMDSEIRVIMAQYMPLDNQPEGSNQVHHNI 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0866 620 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN, THIOREDOXIN-LIKE PROTEIN-RELATED 11 599 - -
Aed3g0866 620 Pfam PA domain 61 160 IPR003137 -
Aed3g0866 620 Gene3D - 21 183 - -
Aed3g0866 620 Gene3D Laminin 467 550 - -
Aed3g0866 620 ProSitePatterns Calcium-binding EGF-like domain signature. 513 539 IPR018097 GO:0005509
Aed3g0866 620 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Aed3g0866 620 SMART egfca_6 513 555 IPR001881 GO:0005509
Aed3g0866 620 SUPERFAMILY PA domain 91 170 IPR046450 -
Aed3g0866 620 CDD EGF_CA 513 544 - -
Aed3g0866 620 Pfam Complement Clr-like EGF-like 497 516 IPR026823 -
Aed3g0866 620 Gene3D Laminin 407 452 - -
Aed3g0866 620 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 11 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0866 Aed-Chr3 6329600 6335938 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0866 5 620 Miscellaneous Gene Families AT3G52850 72.026 0.0 931
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0866 - - gmx:100807514 1232.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0866 3 6329600 6335938 Aed3g0866 3 6329600 6335938 ECH
Aed3g0866 3 6329600 6335938 Aed2g1819 2 22976185 22981051 PCT