Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1819 ATGAGGACAAAACAAAGCTTTTTATGGTGTGTATGGATTTTGCTTTGTGGGTCTTGTGTGGGGAGGTTTGTGGTGGAGAAGAACAATTTGAAAATCACTTCTCCAAACACGTTAAGAGGTATATATGAATGTGCCATTGGGAATTTTGGGGTCCCCAAGTATGGTGGAACCATGATTGGCTCTGTGGTGTACCCCAAGTCCAATCAGAATGGATGTAAAAACTTTGATGCCTCGTTGAGTTCCAAGCCCGGAACCTTCCCAACCTTTGTTCTTGTTGATCGGGGAGGTACAATATTGGGGGTGTGTATGTGTTTCTCTTGGGCATGCAGTTCCATGGCGTGGAATGGACAGAAAGGTGGAGCAGCAGCTATTCTTGTTGCAGATGATAGGATAGAACCATTGATCACGATGGACACTCCAGAAGAAGGGAATAGTGCTCATGATGATGATTATATTCAGAAGATCAACATTCCTTCTGCCCTTATCAGCAAATCACTAGGGGATAACATCAAGCAGGCACTCTCTAACGGGGCTATGGTTAACGTGAATCTTGATTGGAGAGAGGCTCTTCCACACCCTGATGAGAGGGTTGAGTATGAGTTTTGGACAAGTAGCAATGATGAGTGTGGACCAAAGTGTGAAAGTGAAATCAACTTTGTCAAGAGTTTTAAAGGGGCAGCTCAATTACTTGAGCAGAAAGGGTTTGCAAAGTTCACCCCTCACTATATAACTTGGTATTGCCCAGAAGCATTTATACTAAGCGAACAGTGCAAGTCCCAGTGCATTAACAATGGGAGGTACTGTGCACCAGATCCTGAGCTAGATTTCAAAAGAGGCTACAATGGTAGAGATGTTGTTATCCAAAACTTACGCCAAACATGCTTCTTTAAAGTGGCTAATGAAAGTGGAAAGCCTTGGCAATGGTGGGACTACGTCACTGACTTTTCAATCCGTTGCCCAATGAGAGAGAATAAATACACTGAAGAATGCTCAGATCAAGTTATTAAATCTCTTGGTGTTGATTTGAAGAAAGTTAAAGACTGTGTTGGAGATCCTAGTGCAAATGCTGACAACCCTGTTCTTAATGCTGAACAAGATGCACAGATTGGCAACGGTGAACGTGGCGATGTTACTATACTACCTACTCTTATTGTAAACAACAGACAATATAGAGGTAAGCTGTCAAAACCAGCAGTACTCAAGGCAATCTGTTCAGGTTTCCAAGAGACCACTGAGCCATCAATTTGTTTAACCCCAGACATGGAAACAAATGAGTGCTTGCAAAACAATGGTGGTTGTTGGCAGGACAAAGCTGCTAACATTACTGCATGCAGGGTATTTGCTACAGGTGCCTTGAGGTGTGCAGTCCACAATGGAGGTTGTTGGAAGGAAACACAAGGTAGCAGGTCCTACTCTGCTTGTATTGATGACCACACGAAAGGTTGCAAATGTCCACCTGGATTTAAGGGTGATGGTGTCCAGTCATGTGAAGATGTGGATGAGTGCAAAGAGAAATTGGCGTGCCAGTGCCCAGAGTGCCAATGTAAAAATACCTGGGGAAGTTATGAATGCACATGTAGTGATGGCTTGTACTACACGCGAGAAAATGACATGTGTATTGGCAAATATGCTGCTTCAGTGACTGGTGGGGGCATTGTTTGGATGATTATTCTGGTCTTGGGTATTGCTGGTGCTGGGGGATATGCATTTTACAAGTACAGAATCCGGGTATGA 1734 0.4366 MRTKQSFLWCVWILLCGSCVGRFVVEKNNLKITSPNTLRGIYECAIGNFGVPKYGGTMIGSVVYPKSNQNGCKNFDASLSSKPGTFPTFVLVDRGGTILGVCMCFSWACSSMAWNGQKGGAAAILVADDRIEPLITMDTPEEGNSAHDDDYIQKINIPSALISKSLGDNIKQALSNGAMVNVNLDWREALPHPDERVEYEFWTSSNDECGPKCESEINFVKSFKGAAQLLEQKGFAKFTPHYITWYCPEAFILSEQCKSQCINNGRYCAPDPELDFKRGYNGRDVVIQNLRQTCFFKVANESGKPWQWWDYVTDFSIRCPMRENKYTEECSDQVIKSLGVDLKKVKDCVGDPSANADNPVLNAEQDAQIGNGERGDVTILPTLIVNNRQYRGKLSKPAVLKAICSGFQETTEPSICLTPDMETNECLQNNGGCWQDKAANITACRVFATGALRCAVHNGGCWKETQGSRSYSACIDDHTKGCKCPPGFKGDGVQSCEDVDECKEKLACQCPECQCKNTWGSYECTCSDGLYYTRENDMCIGKYAASVTGGGIVWMIILVLGIAGAGGYAFYKYRIRV 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1819 577 Gene3D Laminin 453 540 - -
Aed2g1819 577 CDD EGF_CA 498 529 - -
Aed2g1819 577 Gene3D - 20 193 - -
Aed2g1819 577 SMART egfca_6 498 540 IPR001881 GO:0005509
Aed2g1819 577 PANTHER VACUOLAR-SORTING RECEPTOR 1 10 459 - -
Aed2g1819 577 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 10 459 - -
Aed2g1819 577 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 479 576 - -
Aed2g1819 577 Gene3D Glutaredoxin 270 406 - -
Aed2g1819 577 Pfam PA domain 60 170 IPR003137 -
Aed2g1819 577 ProSitePatterns Calcium-binding EGF-like domain signature. 498 524 IPR018097 GO:0005509
Aed2g1819 577 PANTHER VACUOLAR-SORTING RECEPTOR 1 479 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1819 Aed-Chr2 22976185 22981051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1819 12 576 Miscellaneous Gene Families AT3G52850 65.210 0.0 802
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1819 - - gmx:100815266 1092.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0866 3 6329600 6335938 Aed2g1819 2 22976185 22981051 PCT