Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0792 ATGGGGGTGTTATCTGGGATTTTTCTGGGGATGGTACTCGGCGTAGCATTGATCGCTGCGTGGCATCGCATGATGACGTACCGTAGCGCCAAGAGAATTGCAAAGGCAGTTGACATTAAACTCCTTGGGTCCCTTAACAGAGATGATTTAAAAAAAATTTGTGGTGATAATTTTCCTGAATGGATATCCTTTCCTGTATATGAGCAGGTGAAATGGCTTAACAAGCAGCTGTCCAAACTGTGGCCATTTCTGGCAGATGCAGCAACATTGGTGATTAGAGAATCTGTTGAACCGCTATTGGAAGAGTACAGACCAACTGGAATTTCTTCATTGAAGTTCAGCAAGCTGTCTCTTGGAAGTGTTGCTCCAAAAATTGAAGGTATTCGTGTTCAGAGTCTTAAAAAAGGTCAAGTCACAATGGACATTGATTTCCGTTGGGGTGGTGATCCCGATATTGTTTTGGGTGTTGAAGCACTTGTTGCATCAATCCCTATCCAGTTGAAGGATCTCCAGGTTTTCACCATTATCCGTGTTATATTCCAACTTGCTGATGAGATTCCCTGCATTTCTGCTGTTGTTGTTGCCCTACTTGCTGAGCCAAAGCCTAGAATTGATTACACTCTGAAGGCTGTTGGTGGAAGTTTGACGGCACTTCCTGGAATTTCAGATATGATTGATGATGTGGTGAACACAATTGTTACCGATACACTCCAATGGCCTCATAGGATTGTTGTTCCTCTTGGGGGCATACCTGTTGATACTAGTGAACTGGAGCTTAAACCCCAGGGAATGCTTAGAGTGGCTGTAAATAAAGCGAATGACCTAAAGAATATGGAGATGATTGGGAAGTCTGATCCTTATGCAGTGTTGTATATTCGACCACTGTTTAAGGTTAAAACAAAGGTTATTGATAACAACTTGAATCCTGTTTGGAATGAGGTATTTGACTTGATTGCAGAGGACAAGGAGACCCAGTCACTCATTGTCGAGGTTTTTGATAAAGACATCGGGCAAGATAAGCGATTGGGAATAGTAAAACTACCACTTAATGACCTTAAAGCAGAAACTGAGAAGGAGCTTGAATTGAGGCTGCTGTCATCACTTGATACATTGAAAGTGAAAGACAAGAAGGATCGAGGAACCATAACAATAAAGATCTTTTATCACCAATTTGACAAGAAAGAACAGTTTATTGCACTAGAAGCAGAGAAAAAGGTACTAGAAGAAAGGAAGAAACTTAAAGAAGAGGGAGTTATAGGAACTACAATGGATGCGCTAGATGGAGCAGTGTCGGTAGTTGGGTCCGGTGTTGGAATGGTTGGTACTGGTGTTACAACCGGTGCTGGACTTGTCGGGAGTGGAATTGGTGCCGGAGCTGGAGTTGTAGGGAGTGGAATTAATTCTGGAGCTGGGTTTGTTGGCAGTGGCATCGGTGCTGGAGTTGGTTTTGTCGGCAGTGGTTTTGGTGCTGTTGGTAGTGGACTGAGCAAAGCAGGAAAGTTCATGGGAAGGACAATCACAGGGCAAGGTAGTACCAGAAGGAGTGGTTCCACTACTCCTATCAATTCAGAGGAGGCTGGCGGGGGTGCAAAACCTCTGCTGCAGCAGCAGCAGCAGCACTAA 1623 0.4399 MGVLSGIFLGMVLGVALIAAWHRMMTYRSAKRIAKAVDIKLLGSLNRDDLKKICGDNFPEWISFPVYEQVKWLNKQLSKLWPFLADAATLVIRESVEPLLEEYRPTGISSLKFSKLSLGSVAPKIEGIRVQSLKKGQVTMDIDFRWGGDPDIVLGVEALVASIPIQLKDLQVFTIIRVIFQLADEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGISDMIDDVVNTIVTDTLQWPHRIVVPLGGIPVDTSELELKPQGMLRVAVNKANDLKNMEMIGKSDPYAVLYIRPLFKVKTKVIDNNLNPVWNEVFDLIAEDKETQSLIVEVFDKDIGQDKRLGIVKLPLNDLKAETEKELELRLLSSLDTLKVKDKKDRGTITIKIFYHQFDKKEQFIALEAEKKVLEERKKLKEEGVIGTTMDALDGAVSVVGSGVGMVGTGVTTGAGLVGSGIGAGAGVVGSGINSGAGFVGSGIGAGVGFVGSGFGAVGSGLSKAGKFMGRTITGQGSTRRSGSTTPINSEEAGGGAKPLLQQQQQH 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0792 540 PRINTS C2 domain signature 280 292 IPR000008 -
Aed3g0792 540 PRINTS C2 domain signature 305 318 IPR000008 -
Aed3g0792 540 PRINTS C2 domain signature 327 335 IPR000008 -
Aed3g0792 540 MobiDBLite consensus disorder prediction 505 540 - -
Aed3g0792 540 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 263 390 IPR035892 -
Aed3g0792 540 Gene3D C2 domain 258 417 IPR035892 -
Aed3g0792 540 Pfam C2 domain 264 359 IPR000008 -
Aed3g0792 540 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 468 525 - -
Aed3g0792 540 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 248 IPR031468 GO:0008289
Aed3g0792 540 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 466 IPR045050 GO:0008289
Aed3g0792 540 MobiDBLite consensus disorder prediction 505 524 - -
Aed3g0792 540 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 468 525 IPR045050 GO:0008289
Aed3g0792 540 SMART C2_3c 264 361 IPR000008 -
Aed3g0792 540 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 466 - -
Aed3g0792 540 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 247 IPR039010 -
Aed3g0792 540 CDD C2 265 358 - -
Aed3g0792 540 ProSiteProfiles C2 domain profile. 246 362 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0792 Aed-Chr3 5603376 5612954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0792 248 352 Lipid Metabolism Gene Families AT3G61300 33.962 4.23e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0792 - - gmx:100785209 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0792 3 5603376 5612954 Aed2g0826 2 6369182 6377229 PCT