Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0583 ATGTTTCATCATCACGTGTTATTACAAGTAGAAAAACTCAAAAACATATTTGTCCGAGACTTGTGTTGGAGAACAAGGGCGCAACTAATTCCTGTGGAGTGTCACAGCTCCAACAACTTCAAGATAACAAGAGGGGCTCTTGAAGAAGCATATGAGAAAGCAAAAGAGAGTAACATCAAAGTGAAAGGGTTGATCATAACAAACCCTTCAAACCCTTTGGGAACAACCGTGGACAGGGAAACACTAAAGAGCATAGTGGGGTTCATCAATGAAAAGAACATCCATTTGGTGTGTGATGAAATCTATGCAGCAACAGTGTTCAGAGCACCTAGCTTTGTGAGTGTCTCTGAGGTGATTCAAGACATGGAACTGATGAAAGAACAATGTAACAAAGACCTTATTCACATTATTTATAGTTTGTCTAAGGACTTGGGGCTTCCAGGGTTCAGAGTTGGGATAGTTTACTCATACAACGATGAAGTGGTGAATAGTGGGAGGAAGATGTCTAGCTTTGGATTAGTCTCATCTCAGACACAGCATTTTCTGGCGGCGTTGCTCTCCGACGACGAGTTTGTGGAGAGGTTTCTGGCAGAGAGTGCAAGAAGGTTGGCTGCAAGGCATGGCCACTTCACAAAGGGGCTTGAGAAAGTGAACATTACTTGCTTGCCAAGCAATGCAGGGTTGTTCTGCTGGATGAACCTGAGGGGTTTGCTAAAGGAGAAAACTTTTGAGGGTGAAATGTTGCTGTGGCGTGTGATCATCAATGAGGTGAAGCTTAATGTTTCACCAGGGTCTTCTTTCAATTGTTCTGAGCCTGGTTGGTATAGAGTGTGTTTTGCTAACATGGATCATGAGACTGTGGATGTTGCACTCATGAGAATCAAGGCTTTTGTTGGAAAAGAGACAGGGAAACCACCCAAGGAACTCAAACGTTGGAAGAGCAACCTTAGGCTCAGCTTCTCCTCATCAAGAAGGTTTGATGAGAATGTTATGTCACCTCACATGATGTCACCACATTCACCAATGCCTCACTCACCCCTTTGTCCATCCTTGCCTTTCAATTTGAAAGCCCACAAGGAACACTGTAGACTGTAG 1095 0.4374 MFHHHVLLQVEKLKNIFVRDLCWRTRAQLIPVECHSSNNFKITRGALEEAYEKAKESNIKVKGLIITNPSNPLGTTVDRETLKSIVGFINEKNIHLVCDEIYAATVFRAPSFVSVSEVIQDMELMKEQCNKDLIHIIYSLSKDLGLPGFRVGIVYSYNDEVVNSGRKMSSFGLVSSQTQHFLAALLSDDEFVERFLAESARRLAARHGHFTKGLEKVNITCLPSNAGLFCWMNLRGLLKEKTFEGEMLLWRVIINEVKLNVSPGSSFNCSEPGWYRVCFANMDHETVDVALMRIKAFVGKETGKPPKELKRWKSNLRLSFSSSRRFDENVMSPHMMSPHSPMPHSPLCPSLPFNLKAHKEHCRL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0583 364 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 15 309 - -
Aed3g0583 364 Pfam Aminotransferase class I and II 25 294 IPR004839 GO:0009058|GO:0030170
Aed3g0583 364 Gene3D - 16 188 IPR015421 GO:0003824
Aed3g0583 364 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 2 15 309 - -
Aed3g0583 364 CDD AAT_like 27 296 - -
Aed3g0583 364 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 94 117 - -
Aed3g0583 364 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 4 25 - -
Aed3g0583 364 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 165 188 - -
Aed3g0583 364 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 58 82 - -
Aed3g0583 364 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 133 157 - -
Aed3g0583 364 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 139 152 IPR004838 GO:0003824|GO:0009058|GO:0030170
Aed3g0583 364 SUPERFAMILY PLP-dependent transferases 21 299 IPR015424 -
Aed3g0583 364 Gene3D Aspartate Aminotransferase, domain 1 189 293 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0583 Aed-Chr3 4129326 4132983 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0583 K20772 - gmx:100500423 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0583 3 4129326 4132983 Aed3g0583 3 4129326 4132983 ECH
Aed3g0583 3 4129326 4132983 Aed2g0629 2 4557558 4560886 PCT