Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0629 ATGAGTAAGAGCCAACAGCTTCTGTCCAAGATTGCCACCAATGACAAACATGGAGAGAATTCTCCATATTTTGATGGGTGGAAGGCTTATGATAGAAACCCATTTCACCCAACAAAGAATCCTCAGGGTGTTATTCAGATGGGTCTTGCAGAAAATCAGCTCTGCTTTGATCTGATTGAAGAGTGGATAAAGAAAAATCTCAAGGCTTCCATTTGCACTCCTGAAGGAGTGCATCAGTTCAGAAATATTGCTAACTTTCAGGACTATCATGGACTACCAGAGTTCACAAATGCAATGGCAAAATTCATGTCAAAAGTGAGAGGAGGTAGGGTCAAATTTGATCCAGAGCGTGTAGTGATGAGTGGAGGGGCAACAGGGGCAAATGAACTAATCATGTTCTGCTTAGCTGATCCTGGTGATGCTTTTATGATTCCAACCCCATTCTATCCCGGATTCGTCCGTGACTTGGGTTGGAGAACCGGGGTGCAAATAATTCCTGTCCACTGTGATAGCTCCAACAACTTCAAGATAACAAGAGAAGCACTTGAAGCAGCGTACAAAAAGGCCAAAGAGGACAACATCAACATTAAGGGGTTGATCATAACAAACCCTTCTAACCCTTTGGGCACAACACTAGACAAGGACACATTGAAGAGCCTAGTGAGTTTCATCAATGAGAAAAACATTCACTTGGTTTGTGATGAAATCTATGCAGCCACTGTGTTCAGCTCCCACAGATATGTAAGCGTTGCTGAAGTGATCCAAGAAATGGAACATTGCAACCGTGACCTAATTCACGTTATTTATAGTTTGTCTAAGGACATGGGGTTCCCTGGCTTCAGAGTTGGAATAGTTTATTCATTCAACGATGAAGTGGTGAGTTGTGGAAGGAAAATGTCGAGTTTCGGATTAGTCTCTTCCCAAACTCAACACATGTTGGCTTCGATGCTTTCGGATGAGAACTTTGTGACAAAGTTTCTTTCGGAGAATTCGAGGAGGTTGGAGCAAAGGCACGACAAGTTCATGAAGGGGCTTGAGGAGGTTAACATCACTCGATTCCCAAGCAATGCGGGACTATTTTGTTGGATGAACTTGAAGAGTTTGTTGGAGGAGCAAACTTTTGAAGCTGAGATGAAGCTGTGGCGTGTGATCATTCATGAGGTGAAGCTGAACGTGTCACCTGGCTCTTCTTTCAACTGTTCTGAGCCTGGTTGGTTTAGGGTTTGCTTTGCCAACATGGATGATGAAACAATGGACGTTGCACTCAACAGGATTCGTGCATTCGTGGGAAAAGAAACGACAAAGAAGCCTTTGGGAGGAATCAAACGTTGGCAACAGAATCTTAGGCTCAGTTTTTCTTCAAGGATGTTTGATGAGAGTGTTATGTCTCCTCATTCCCCTATTCCCACGTCACCACTTGTTGGAGCAACTTGA 1434 0.4358 MSKSQQLLSKIATNDKHGENSPYFDGWKAYDRNPFHPTKNPQGVIQMGLAENQLCFDLIEEWIKKNLKASICTPEGVHQFRNIANFQDYHGLPEFTNAMAKFMSKVRGGRVKFDPERVVMSGGATGANELIMFCLADPGDAFMIPTPFYPGFVRDLGWRTGVQIIPVHCDSSNNFKITREALEAAYKKAKEDNINIKGLIITNPSNPLGTTLDKDTLKSLVSFINEKNIHLVCDEIYAATVFSSHRYVSVAEVIQEMEHCNRDLIHVIYSLSKDMGFPGFRVGIVYSFNDEVVSCGRKMSSFGLVSSQTQHMLASMLSDENFVTKFLSENSRRLEQRHDKFMKGLEEVNITRFPSNAGLFCWMNLKSLLEEQTFEAEMKLWRVIIHEVKLNVSPGSSFNCSEPGWFRVCFANMDDETMDVALNRIRAFVGKETTKKPLGGIKRWQQNLRLSFSSRMFDESVMSPHSPIPTSPLVGAT 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0629 477 Coils Coil 172 192 - -
Aed2g0629 477 Pfam Aminotransferase class I and II 45 425 IPR004839 GO:0009058|GO:0030170
Aed2g0629 477 SUPERFAMILY PLP-dependent transferases 13 430 IPR015424 -
Aed2g0629 477 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 3 446 - -
Aed2g0629 477 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 3 446 - -
Aed2g0629 477 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 270 283 IPR004838 GO:0003824|GO:0009058|GO:0030170
Aed2g0629 477 CDD AAT_like 85 427 - -
Aed2g0629 477 Gene3D - 67 319 IPR015421 GO:0003824
Aed2g0629 477 Gene3D Aspartate Aminotransferase, domain 1 33 424 IPR015422 GO:0003824
Aed2g0629 477 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 80 96 - -
Aed2g0629 477 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 264 288 - -
Aed2g0629 477 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 296 319 - -
Aed2g0629 477 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 229 252 - -
Aed2g0629 477 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 117 137 - -
Aed2g0629 477 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 47 73 - -
Aed2g0629 477 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 139 160 - -
Aed2g0629 477 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 193 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0629 Aed-Chr2 4557558 4560886 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0629 K20772 - gmx:100813347 894.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0629 2 4557558 4560886 Aed2g0629 2 4557558 4560886 ECH
Aed3g0583 3 4129326 4132983 Aed2g0629 2 4557558 4560886 PCT