Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0473 ATGGTAAACTCTGTTTCATCTCTCTCACTATGTTTCCCTCCAAACCCGACACCCAACATTTTCCAAGCCTTCAGCTTTAGACCCTCCGACAAAACCCACCACACAAAACCTCCCAGATTCACCACCCCCAGAAAGCACAGAACCAAAAAGGTGAAACCTTTCACCGAAAAAGACGCGTTTCCGTGCTCCTTACCCCTCCACAACAAAAACCCAATCTTCATCTACAAAGACATCAAGCATTTCGCACGCCAGAACAAGCTCAAAGAAGCTCTCACCATCTTGGACTACGTGGACCAACGTGGCATCCCCGTGAACGCCACAACTTTCTCTTCTCTCATCGCCGCGTGCACCCGCACCAAGTCATTGCCACAAGGAAGGGAAGTCCACACCCACATCAGAATCAATGGACTCGAAAACAACGTTTTCTTGCGGACTAAGCTCGTTCACATGTACACCGCATGTGGGTCGTTGGAAGAGGCACAGAAACTGTTTGATGGGTTGCCCTGTGAGAGTGTTTACCCTTGGAACGCTTTGCTCAGAGGGACTGTGGTTTCGGGAAAAAGACAGTACATTGATGTGCTTAAGACTTATACTGAGATGAGGGCATTGGGGGTTCAGTTGAATGTGTATAGTTTCTCTAATGTGATCAAGAGTTTTGCTGGCGCGAGGGCGTTTTCGCAAGGCTTGAAGACTCACGGGCTTTTGATCAAGAATGGATTTGTGGATAACTACATTCTTAGAACCAGTTTGATTGATATGTACTTCAAGTGTGGGAAGGTTAGGCTCGCGTGCCGGGTGTTTGAGGAAATTCCAGAGAGGGATGTTGTTGCGTGGGGGGCGATGCTTGCTGGTTTTGCGCACAATAGGTTGCAGAGGGAGGTGTTGGAGTATGTGAGGTGGATGGTGGAGGAGGGACTGAAGCCGAATTCGGTTGTGATGACGATTGTGATTCCTGTGATTGGGGAGGTTTGTGCAAGGAGGTTGGGTCAGGAGTTTCATGCTTATGTTGTGAAAACAAAATCGTACTCTAAGCTGGTGCCGGTTCAGTCTTCTTTGATTGATATGTATTGTAAGTGTGGGGATATGATTTCAGCAAGACGGGTTTTTTATGGTTCAATGGAGAGGAATGTGGTTTGTTGGACGGCTCTGATGGCGGGTTATGCTGCGAATGGGAAACTTGAGCAGGCGCTGAGGTCCACAATTTGGATGCAACAAGAAGGGGTCAGGCCAGATGTGGTGACACTTGCCACTGTTCTTCCTGTTTGTGCACAGTTGAGGGCTCTGGAACAAGGGAAGCAGATTCATGCTTATGCTTTGAAACATTGGTTTCTGCCTAATGTGTCTGTAACTTCTTCATTGATGATGATGTACTCTAAGTGTGGCGTTGTTGAGTATTCTAGAAGATTGTTTGATAATATGGAACAAAGGAATGTGATTTCATGGACCGCCATGATTGATTCGTATATCGAAAATGGGTATCTGTGTGAAGCACTTGGTGTGATTAGGTCAATGCAATTGTCAAAGCATAGGCCAGACTCTGTTGCTATGGGAAGGATGTTGAGTGTTTGTGGTGAACTAAAACTTGTGAAGCTTGGGGAGGAGATTCATGGGCAGATCTTGAGAAGGGACTTTACATCAGTCCATTTTGTTTCTGCAGAACTTATCAATATGTACGGCTCATTTGGAGATATTAATAAGGTTAATTTAGTGTTTAGTGCAGTTCCTGTTAAAGGTTCTATGACATGGACGGCTCTTATAAGGGCCCATGGATATAATGAATTGTATCAAGATGCAGTTAACCTTTTTGATCAGATGAGATCTTCTCCAAACCACTTCACTTTTGAAGCCATTCTATCTATATGTGACAGAGCTGGATTTGTTGATGATGCTTGTAGAATCTTCAATTCAATGCCTGGATATAAAATTGAAGCATCTAAGGAACACTTCGCTATTATGGTGCGATTACTTACACGCAATGGTCAGCTAGAGGAAGCTCAGAGATTTGAACAATTGAGTTCTTTCTTGTAG 2028 0.4477 MVNSVSSLSLCFPPNPTPNIFQAFSFRPSDKTHHTKPPRFTTPRKHRTKKVKPFTEKDAFPCSLPLHNKNPIFIYKDIKHFARQNKLKEALTILDYVDQRGIPVNATTFSSLIAACTRTKSLPQGREVHTHIRINGLENNVFLRTKLVHMYTACGSLEEAQKLFDGLPCESVYPWNALLRGTVVSGKRQYIDVLKTYTEMRALGVQLNVYSFSNVIKSFAGARAFSQGLKTHGLLIKNGFVDNYILRTSLIDMYFKCGKVRLACRVFEEIPERDVVAWGAMLAGFAHNRLQREVLEYVRWMVEEGLKPNSVVMTIVIPVIGEVCARRLGQEFHAYVVKTKSYSKLVPVQSSLIDMYCKCGDMISARRVFYGSMERNVVCWTALMAGYAANGKLEQALRSTIWMQQEGVRPDVVTLATVLPVCAQLRALEQGKQIHAYALKHWFLPNVSVTSSLMMMYSKCGVVEYSRRLFDNMEQRNVISWTAMIDSYIENGYLCEALGVIRSMQLSKHRPDSVAMGRMLSVCGELKLVKLGEEIHGQILRRDFTSVHFVSAELINMYGSFGDINKVNLVFSAVPVKGSMTWTALIRAHGYNELYQDAVNLFDQMRSSPNHFTFEAILSICDRAGFVDDACRIFNSMPGYKIEASKEHFAIMVRLLTRNGQLEEAQRFEQLSSFL 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0473 675 MobiDBLite consensus disorder prediction 27 51 - -
Aed3g0473 675 TIGRFAM PPR: pentatricopeptide repeat domain 479 513 IPR002885 -
Aed3g0473 675 TIGRFAM PPR: pentatricopeptide repeat domain 581 608 IPR002885 -
Aed3g0473 675 TIGRFAM PPR: pentatricopeptide repeat domain 248 276 IPR002885 -
Aed3g0473 675 Pfam PPR repeat family 375 422 IPR002885 -
Aed3g0473 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Aed3g0473 675 PANTHER OS07G0578800 PROTEIN-RELATED 23 668 IPR045215 GO:0003723|GO:0009451
Aed3g0473 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Aed3g0473 675 Pfam PPR repeat 581 607 IPR002885 -
Aed3g0473 675 Pfam PPR repeat 350 370 IPR002885 -
Aed3g0473 675 Pfam PPR repeat 451 478 IPR002885 -
Aed3g0473 675 Pfam PPR repeat 248 274 IPR002885 -
Aed3g0473 675 Pfam PPR repeat 479 505 IPR002885 -
Aed3g0473 675 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 477 511 IPR002885 -
Aed3g0473 675 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 23 668 - -
Aed3g0473 675 Gene3D Tetratricopeptide repeat domain 74 187 IPR011990 GO:0005515
Aed3g0473 675 Gene3D Tetratricopeptide repeat domain 390 549 IPR011990 GO:0005515
Aed3g0473 675 Gene3D Tetratricopeptide repeat domain 550 671 IPR011990 GO:0005515
Aed3g0473 675 Gene3D Tetratricopeptide repeat domain 188 346 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0473 Aed-Chr3 3437326 3439353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0473 292 672 Glycoside Hydrolase AT3G49170 28.607 1.34e-34 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0473 - - gmx:100809249 1281.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1735 2 21946447 21947958 Aed3g0473 3 3437326 3439353 PCT