Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0461 ATGAGAGGTTGTCTGCAAGGTTGTTACATTGATATGGGAGTTGACTTCCGGTATTGGAATGATTATCTGTTCAAGCTCCTTCTTATTGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTGAGATTTGCTGATGATTCGTACATTGATAGCTACATTAGCACCATTGGAGTTGATTTTAAAATACGTACCGTTGAGCAGGATGGAAAGACTATTAAACTACAGATCTGGGACACAGCCGGCCAAGAACGATTTAGGACCATCACCAGTAGCTACTACCGTGGGGCCCATGGAATCATTATTGTTTATGATGTGACAGATGAAGAGAGCTTCAATAATGTGAAGCAGTGGCTCAGTGAAATTGATCGCTATGCAAGTGATAATGTTAACAAGCTTTTGGTTGGCAACAAGTGTGATCTGGCAGCAAATAGAGCTGTGTCATACGATACAGCTAAAGCATTTGCAGATGAAATAGGCATACCTTTTATGGAAACAAGTGCAAAAGATGCTACAAATGTTGAACAGGCTTTCATGGCAATGGCTGCTTCAATCAAGGATAGAATGGCAAGCCAACCTACAAATAATACCAGGCCTCCAACAGTGCAGATCAAGGGACAGCCAGTTGCACAGAAAGGTGGGTGCTGCTCTTCCTAA 654 0.4235 MRGCLQGCYIDMGVDFRYWNDYLFKLLLIGDSGVGKSCLLLRFADDSYIDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDLAANRAVSYDTAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKDRMASQPTNNTRPPTVQIKGQPVAQKGGCCSS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0461 217 SMART rho_sub_3 26 186 IPR001806 GO:0003924|GO:0005525
Aed3g0461 217 ProSiteProfiles small GTPase Rho family profile. 17 189 - -
Aed3g0461 217 MobiDBLite consensus disorder prediction 188 203 - -
Aed3g0461 217 Gene3D - 17 211 IPR027417 -
Aed3g0461 217 SMART arf_sub_2 12 192 - -
Aed3g0461 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 196 IPR027417 -
Aed3g0461 217 PANTHER LD21953P-RELATED 13 216 - -
Aed3g0461 217 SMART ras_sub_4 21 187 - -
Aed3g0461 217 MobiDBLite consensus disorder prediction 188 217 - -
Aed3g0461 217 ProSiteProfiles small GTPase Ras family profile. 17 217 IPR001806 GO:0003924|GO:0005525
Aed3g0461 217 PANTHER RAS-RELATED PROTEIN RABD2A-LIKE 13 216 - -
Aed3g0461 217 TIGRFAM small_GTP: small GTP-binding protein domain 22 178 IPR005225 GO:0005525
Aed3g0461 217 ProSiteProfiles small GTPase Rab1 family profile. 19 215 - -
Aed3g0461 217 PRINTS Transforming protein P21 ras signature 162 184 - -
Aed3g0461 217 PRINTS Transforming protein P21 ras signature 47 63 - -
Aed3g0461 217 PRINTS Transforming protein P21 ras signature 65 87 - -
Aed3g0461 217 PRINTS Transforming protein P21 ras signature 24 45 - -
Aed3g0461 217 PRINTS Transforming protein P21 ras signature 127 140 - -
Aed3g0461 217 CDD Rab1_Ypt1 22 187 - -
Aed3g0461 217 SMART rab_sub_5 24 187 - -
Aed3g0461 217 SMART ran_sub_2 29 216 - -
Aed3g0461 217 Pfam Ras family 25 185 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0461 Aed-Chr3 3291481 3295015 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0461 K07874 - gmx:100813403 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0461 3 3291481 3295015 Aed3g0461 3 3291481 3295015 ECH
Aed2g1755 2 22244600 22248128 Aed3g0461 3 3291481 3295015 PCT