Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0160 ATGGATTGTTGGTCTTCTCCTCTCCCTCTCCACGATGAATTCGAGAAGCTTGTCATTCGAATGAACCCTCCCAGAGTTGCTGTGGATAACATTTCAAGCAGAACAGACACTGTGATAAAGGTTGATAGCGCAAACAAGCGTGGGAGCTTGTTGGAGGTGGTTCAGGTTCTCACTGATATGAATCTCAGCGTTAGAAGAGCTTACATTTCCTCTGATGGAGAATGGTTCATGGATGGTACGGTTCCCTTCACACTTCTCAATTTTCCTTCTACTATGGATGGCTTTGGTGAATTGTTTTTTTCGGTTTTTGTAATCTTGTTTCATGTGCTTTTTGCTCACTGGCCAGTTTTTCATGTCACTGATCAAAATGGGAAAAAGTTTCTTCAAGATGATGTTGCTGACCGTATTCAACAGTCACTGGGTCCAAGAGCCTCTAGTTTTCGATCCTTGAGAAGGTCTGTTGGGGTCCAAGCTGAAGCAGAACATACAACCATTGAGTTAACCGGAAGAGACAGGCCGGGATTGCTTTCAGAAGTGTTTGCTGTTCTTGCAGACCTCAAATGCAATGTGGTAGCAGCAGAAGTCTGGACCCACAATTCAAGAATGGCATCTGTTGTTTACATCACAGATGAGGCGTTGGGATTGTCCATTGACGATCCGGATCGCCTTGCCAAGATTAAGCAGCTTCTACTGTATGTGCTGAAAGGAGACATAGATAAGAAGAGTGCCAACACTGCTGTTTCTGTTGGTTCCACTCACAAGGATAGGAGGCTGCATCAGTTGATGTATGCCGACCGCGATTATGACGTAGATGATGGGGATTCTGGCTCAACAAGTGTCAGGAACAAGCTCCTTGTAACTGTTGATGATTGCATAGATAAGGGATACACTGTTGTGAACTTGAGGTGTCCAGACAGACCAAAGTTGCTGTTTGATACCGTGTGCACACTCACAGACATGCAGTATGTTGTGTACCATGGAACTGTCATTGCTGAAGGACCAGAGGCATATCAGGAATATTATATAAGGCATGTGGATGGATGTCCTATAAGTTCTGAAGCAGAAAGGCAAAGAGTGATTCATTGTTTGGAGGCTGCTATTAGGAGACGAACTTCTGAGGGTATAAAGCTAGAACTATGTGGGGAAGACAGGGTTGGCCTTTTGTCTGATGTAACTCGCATCTTTAGAGAAAATGGTCTTTCAGTCAACCGTGCTGAAGTTACAACCAGGGGCACGCAAGCGGTGAATGTTTTCTATGTGACTGATGTATCTGGAAATCAAGTCAAGAGTGAAACAATTGAAGCAGTTCGAAAAGAGATTGGCTTGGCCATACTGCATGTAAAAGATGATGTCTGCTCAAAACCACCACCCCAAGAGAGTGGCAAATTCTCTTTGTCTAGTCTCTTTCGGTCAAGCTCTGAGAAATTTCTCTACAACTTGGGTTTGATGAAGTCTTATTCTTGA 1464 0.4399 MDCWSSPLPLHDEFEKLVIRMNPPRVAVDNISSRTDTVIKVDSANKRGSLLEVVQVLTDMNLSVRRAYISSDGEWFMDGTVPFTLLNFPSTMDGFGELFFSVFVILFHVLFAHWPVFHVTDQNGKKFLQDDVADRIQQSLGPRASSFRSLRRSVGVQAEAEHTTIELTGRDRPGLLSEVFAVLADLKCNVVAAEVWTHNSRMASVVYITDEALGLSIDDPDRLAKIKQLLLYVLKGDIDKKSANTAVSVGSTHKDRRLHQLMYADRDYDVDDGDSGSTSVRNKLLVTVDDCIDKGYTVVNLRCPDRPKLLFDTVCTLTDMQYVVYHGTVIAEGPEAYQEYYIRHVDGCPISSEAERQRVIHCLEAAIRRRTSEGIKLELCGEDRVGLLSDVTRIFRENGLSVNRAEVTTRGTQAVNVFYVTDVSGNQVKSETIEAVRKEIGLAILHVKDDVCSKPPPQESGKFSLSSLFRSSSEKFLYNLGLMKSYS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0160 487 ProSiteProfiles ACT domain profile. 376 454 IPR002912 -
Aed3g0160 487 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 116 485 IPR040217 -
Aed3g0160 487 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 2 78 IPR040217 -
Aed3g0160 487 CDD ACT_ACR_2 163 236 - -
Aed3g0160 487 Gene3D - 162 233 - -
Aed3g0160 487 ProSiteProfiles ACT domain profile. 164 241 IPR002912 -
Aed3g0160 487 CDD ACT_ACR_4 374 445 - -
Aed3g0160 487 SUPERFAMILY ACT-like 35 78 IPR045865 -
Aed3g0160 487 Gene3D - 374 448 - -
Aed3g0160 487 SUPERFAMILY ACT-like 372 441 IPR045865 -
Aed3g0160 487 Pfam ACT domain 163 211 IPR002912 -
Aed3g0160 487 Pfam ACT domain 378 438 IPR002912 -
Aed3g0160 487 CDD ACT_ACR_3 296 370 - -
Aed3g0160 487 SUPERFAMILY ACT-like 161 233 IPR045865 -
Aed3g0160 487 PANTHER OS08G0515400 PROTEIN 116 485 - -
Aed3g0160 487 PANTHER OS08G0515400 PROTEIN 2 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0160 Aed-Chr3 1158042 1161939 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0160 - - gmx:100798999 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0160 3 1158042 1161939 Aed3g0160 3 1158042 1161939 ECH
Aed3g0160 3 1158042 1161939 Aed6g0492 6 4262103 4265404 ECH
Aed3g0160 3 1158042 1161939 Aed9g1172 9 8854473 8858253 ECH