Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g2023 ATGGCTCCTCCTAACATTATCCTCTTTCTATTACTAGCTCTTATTCCCTCTCACACTGCAACCGCATTCAGTTCCTCCAACACAAGCACCATCACTCTCCCTCTCTCCCTTCTACTCACCAAATCCAAACCCCATTCCACAGATCCATTCCACTCCCTCAAACTAGCCGCCTCCGCTTCCCTAACCCGGGCCCACCACCTCAAGCACCGCAACAAGAACTCCCCCTCTGTAGCCACAATCCCAGTGTACCCCAAATCCTACGGAGGCTACTCCATAGATTTAAACTTTGGAACCCCACCTCAAACCTCTCCCTTCGTTCTGGACACAGGTAGTAGTCTGGTATGGGTGCCCTGCACCTCCCGATACCTCTGCTCCAACTGCAACTTTCCTAACATCGATCCTACCAAAATCCCCACCTTCATTCCCAAAAACTCCTCCACCGCTAAAATCGTCGGCTGCGCTAACCCCAAATGTGGCTACCTCTTCGGTCCGGACGTCCAATCTCGCTGTCCCCAATGCAAACCCGAATCCCAAAAAAACTGTTCTCTCACTTGCCCAGCTTACATTATCCAATACGGCCTAGGCTCCACCGTAGGCTTCCTACTCCTCGACAATCTCAGTTTCCACGCAAAAACCGTTCCTCAGTTTCTGTTCGGCTGCTCCATCCTCTCCATTGGTCAACCCTCCGGAATCGCCGGCTTCGGACGGGGCCCTGAGTCTCTCCCCTCACAGATGAATCTCAAGAGATTTGCTTACTGCTTAGTCTCCCACCGCTTCGACGATACGCCGCAAAGCAGCGACCTCGTCTTGCAGATTAGCTCCACCGGGGACACCAAAACCAACGGCCTCAGCTACACTCCGCTTCGCTCCAACCCTTTCACTGACAACGCCGCGTTTAAAGAGTATTACTATGTTACCCTCCGCAAGGTCATTGTCGGAGGCGAGGACGTTAAGATTCCGTACAAGTTTCTGGAGCCTGACTCTGACGGTAACGGCGGCACCATCGTGGACTCCGGATCCACCTTCACGTTCATGGAGCGGCCCGTTTATAATTTGGTGGCCCAACAGTTTGTGAAGCGGCTGGAGAAGGAATACTCCAGGGCCAAGGACCTTGAGGCCCAATCTGGGTTGAGTCCCTGCTTTAATATCTCCGGCGTCAAGACCGTCACTTTCCCCCAGTTGACTTTTCAGTTCAAAGGCGGCGCCAAAATGACGCTCCCGCTTACAAATTATTTCTCATTGGTCGGGGATTCCGAGGTCGTGTGTTTGACCCTTGTCTCCGACGGAGGTGTCGGTCCGCCCAAGACCACCGGTCCGGCCATCATTCTTGGGAATTATCAGCAGCAGAATTTCTACATTGAATATGATTTGGAGAATGAGAGGTTCGGATTTGGTCCTCGCGGTTGCAGCAAAGGGAAAGCTTAG 1425 0.527 MAPPNIILFLLLALIPSHTATAFSSSNTSTITLPLSLLLTKSKPHSTDPFHSLKLAASASLTRAHHLKHRNKNSPSVATIPVYPKSYGGYSIDLNFGTPPQTSPFVLDTGSSLVWVPCTSRYLCSNCNFPNIDPTKIPTFIPKNSSTAKIVGCANPKCGYLFGPDVQSRCPQCKPESQKNCSLTCPAYIIQYGLGSTVGFLLLDNLSFHAKTVPQFLFGCSILSIGQPSGIAGFGRGPESLPSQMNLKRFAYCLVSHRFDDTPQSSDLVLQISSTGDTKTNGLSYTPLRSNPFTDNAAFKEYYYVTLRKVIVGGEDVKIPYKFLEPDSDGNGGTIVDSGSTFTFMERPVYNLVAQQFVKRLEKEYSRAKDLEAQSGLSPCFNISGVKTVTFPQLTFQFKGGAKMTLPLTNYFSLVGDSEVVCLTLVSDGGVGPPKTTGPAIILGNYQQQNFYIEYDLENERFGFGPRGCSKGKA 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g2023 474 Pfam Xylanase inhibitor C-terminal 303 465 IPR032799 -
Aed2g2023 474 ProSiteProfiles Peptidase family A1 domain profile. 90 465 IPR033121 -
Aed2g2023 474 CDD pepsin_A_like_plant 89 469 IPR034161 -
Aed2g2023 474 PANTHER OS07G0603500 PROTEIN-RELATED 5 469 - -
Aed2g2023 474 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 105 116 IPR001969 GO:0004190|GO:0006508
Aed2g2023 474 PRINTS Pepsin (A1) aspartic protease family signature 441 456 IPR001461 GO:0004190|GO:0006508
Aed2g2023 474 PRINTS Pepsin (A1) aspartic protease family signature 96 116 IPR001461 GO:0004190|GO:0006508
Aed2g2023 474 PRINTS Pepsin (A1) aspartic protease family signature 334 345 IPR001461 GO:0004190|GO:0006508
Aed2g2023 474 Gene3D Acid Proteases 270 473 IPR021109 -
Aed2g2023 474 SUPERFAMILY Acid proteases 83 469 IPR021109 -
Aed2g2023 474 Pfam Xylanase inhibitor N-terminal 90 267 IPR032861 -
Aed2g2023 474 Gene3D Acid Proteases 41 264 IPR021109 -
Aed2g2023 474 Coils Coil 354 374 - -
Aed2g2023 474 PANTHER BNACNNG47670D PROTEIN 5 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g2023 Aed-Chr2 24668009 24669433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g2023 61 471 Miscellaneous Gene Families AT1G44130 27.828 7.83e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g2023 - - gmx:100805927 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2023 2 24668009 24669433 Aed2g2023 2 24668009 24669433 ECH
Aed2g2023 2 24668009 24669433 Aed8g0589 8 5070310 5072114 PCT