Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0671 ATGTCAGAAACTGACTTGGCAGTTATTAAACCTGAGATGATGAAGCCGTATGTCTGGCTTCATACTTCAGATGATTCAATCCAACAAGTGGAACAAGAAATTGCAATGTTTTGCCCACTGATATGCCAAGAAATAATACAAAAAGGCATGGGATCTTCCAAGAATTGCGCAATATGTCTTCCTCAACAAGTCAGTCCTGCCATGTTGAGCTTAATTCTCGATTATTGTCGTTTTCATCAAGTACCAGGCCGCTCAAACAAGGAACGCAAATCTTATGATGAGAAATTCGTTAGGATAGACACAGAGAGGCTTTGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTAAAACCTTTGGTTGATCTTACCAGTCGTGCACTTGCTCGAATAATTGAAGGGAAAACACCGGAGGAGATACGCGATATATTTCATTTGCCTGATGATCTTACAGAGGAAGAAAAGTTGGAACCCTTGAGAAATATAACTGCCGATCCAAGAATCAGACTTTTGAACCGTTTGTATGCCAAAAAGAGAAAAGAACTAAAAGAGCGCGAAAGGTTAAAGAATGTTGAAGTTGAAGAAGAACACGTGGATGAACGTTCAGTTGATGACCTTTTGTCTTTTATTAATGGAAATGATGGAGATCCAAAGGGAGTTAAAACTTCAAAGAATAAAAAGAAGAACCGGAGGAAAAAAGAGCAACAGAAGAACTCTTCTTTGAAGGAGGCACCTGAACTGAACAAAAAGGAGGTAAATGGTCATGATATCAGACATCAAAGTTCTGAAGCTGAGAGAATTAGTGAGACCTCATATTTACCCTATGCAGAAGATGATACATTTTCTCCTAAGGCTGAGTTTGATGATGGTGATATAGATGATGAGATCGATCCTGCTTTAAAGGAAAAAATTGACAGGGAAGTGGAAGATTTTGCCCGCAGATTAAATTCTGACTGGCCAGAAAGAATGCAAGAACTTTTATCTTCAGGGCAAGAACGGAAGACAATGCTTTTTACTACAGATGGACTGAACTTAGAATGGAATTATGGAAATGAATCCTTACCAAAGGCTTCAACAATTTTGAGAGATGCTGGCAAGAGCAAGAAAAGTTTTGCATGTCAGTTACATTTGGTGTGGGGCAAGGATTTATCTTCAGAGTTTACCATGTAA 1167 0.3907 MSETDLAVIKPEMMKPYVWLHTSDDSIQQVEQEIAMFCPLICQEIIQKGMGSSKNCAICLPQQVSPAMLSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRDIFHLPDDLTEEEKLEPLRNITADPRIRLLNRLYAKKRKELKERERLKNVEVEEEHVDERSVDDLLSFINGNDGDPKGVKTSKNKKKNRRKKEQQKNSSLKEAPELNKKEVNGHDIRHQSSEAERISETSYLPYAEDDTFSPKAEFDDGDIDDEIDPALKEKIDREVEDFARRLNSDWPERMQELLSSGQERKTMLFTTDGLNLEWNYGNESLPKASTILRDAGKSKKSFACQLHLVWGKDLSSEFTM 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0671 388 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
Aed2g0671 388 SMART skp1_3 15 116 IPR001232 GO:0006511
Aed2g0671 388 Coils Coil 170 190 - -
Aed2g0671 388 PANTHER SKP1 1 280 IPR016897 GO:0006511
Aed2g0671 388 SUPERFAMILY POZ domain 16 80 IPR011333 -
Aed2g0671 388 MobiDBLite consensus disorder prediction 235 264 - -
Aed2g0671 388 Gene3D Potassium Channel Kv1.1; Chain A 12 161 IPR011333 -
Aed2g0671 388 Coils Coil 223 243 - -
Aed2g0671 388 MobiDBLite consensus disorder prediction 206 291 - -
Aed2g0671 388 SUPERFAMILY Skp1 dimerisation domain-like 90 159 IPR036296 GO:0006511
Aed2g0671 388 Pfam Skp1 family, tetramerisation domain 18 80 IPR016073 GO:0006511
Aed2g0671 388 PANTHER SKP1-LIKE PROTEIN 20 1 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0671 Aed-Chr2 4853405 4859528 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0671 - - gmx:100794666 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0671 2 4853405 4859528 Aed2g0671 2 4853405 4859528 ECH
Aed2g0671 2 4853405 4859528 Aed3g0618 3 4394346 4400422 ECH
Aed3g0618 3 4394346 4400422 Aed2g0671 2 4853405 4859528 PCT