Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0172 ATGGCCAAGTCTTTTGAGGTTACTGATTTACCAGTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAAAGTTTTTGAGGCACATACAGATTACATTAGGTGTGTGGCAGTTCATCCTACCCTTCCATATGTGTTGTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAAAAGGGCTGGATCTGTACCCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGATTTGGAATCTTGGCTCTCCTGACCCCAATTTTACATTGGATGCTCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAACCTTATCTTATAACTGGTTCTGATGATCACACTGCCAAGGTATGGGATTATCAAACCAAAAGTTGTGTCCAGACTCTAGAAGGTCACACACACAATGTATCTGCTGTATGCTTTCATCCTGAACTACCTATAATCATTACTGGCTCTGAGGATGGCACAGTGCGCATTTGGCATTCAACAACTTATAGACTTGAGAACACATTGAACTATGGTCTTGAAAGAGTTTGGGCTATTGGATACCTGAGGGGTTCACGCCGGGTTGTGATAGGCTACGATGAAGGTACTATTATGGTCAAACTTGGCCGAGAAGAACCTGTAGCCAGCATGGATAACAGTGGGAAAATAATTTGGGCTAAGCATAATGAAATTCAAACCGTCAATATAAGGAGTGTAGGAGCAGATGTGGAGAGTTTAAGGCACAATCCGAATGGAAGGTTTGTTGTTGTTTGTGGAGATGGGGAGTACATTATATACACTGCTTTGGCATGGAGAAATAGATCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCAGATGGGGAGTATGCTGAAAAGAAGAGTATCCGACCAACTTTTTCAGCTGAACGAATATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAAAACCTCTACTGGGCTGATAGTGGTGATCTAGTGACAATTGCTAGTGATACATCATTCTACATCCTGAAGTACAATCGTGATGTTGTTGCATCATATTTAGATAGTGGAAGCCCTGTAGATGAGCAAGGTGTTGAAGATGCCTTTGAGCTCCTTCATGAAATGAGTGAACGTGTCAGGACAGGGATATGGGTTGGGGATTGTTTTATCTACAGCAATTCTTCTTGGAGGCTTAACTATTGTGTTGGTGGTGAGGTAACTACAATGTTTCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCGGCCAAAGTAGGGTCTATTTGATAGACAAAGAATTCAATGTTATGGGATACACACTACTTTTAAGCTTGATTGAGTACAAGACACTTGTCATGCGCGGTGATTTGGAAAGGGCCAATGAAATTCTACCATCAATTCCTAAAGAGCATCATAACAGTGTGGCTCGTTTCCTGGAATCACGAGGGATGATAGAGGATGCTCTTGAAGTAGCTACCGATCCTGACTATAGATTTGATTTAGCCATACAGCTTGGAAGATTAGAGGTTGCGAAGAGTATTGCCACTGAAGTGCAGAGTGAAACCAAATGGAAGCAATTGGGAGAACTTGCAATGTCTAATGGAAAGTTAGAACTGGCTGAGGAGTGTTTAAAACAAGCAATGGATTTGAGTGGGTTATTGCTGCTATATTCTTCTTTAGGAGATGCTGAAGGAATATCAAAACTTGCAACTCTTGCTAAAGAGCAAGGGAAGAATAATGTTGCATTCCTTTGCTTATTCATGTTGGGTAAACTTGAGGACTGCCTTCAACTTTTGGTAGAAAGCAATCGGATTCCAGAGGCTGCTTTAATGGCTCGATCCTATCTCCCAAGCAAGGTCTCAGAGATAGTGGCAATTTGGAGAAAAGATCTCAGTAAGGTTAATCCAAAAGCCGCCGAATCATTGGCTGATCCAGAGGAGTATCCTAATTTGTTTGATGATTGGCAAGTTGCACTTGCTGTTGAATCTAAAGCTGTAGAAACAAGAGGCGTTTACCCTCCTGCATTGGAGTATGTGAACCAGGCTGGTAAATCACACATCACCCTTGTTGAGGCTTTCAGAAAATTGCAGATGGAAGAAGGGGACCATCCTCTTGAGAACGGGGACTCTAACCATGAGATGACCGAACAAAATGGAGAAGAGGACTATACAGAGGAACAAAATGGAGAAGAAGGAAGCCAGGAGGAGGCAGTTGTAGTGGATGCCGATTCTGCAGATGGTGCAGTCCTCATCAATGAATGGTAA 2448 0.4175 MAKSFEVTDLPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLRGSRRVVIGYDEGTIMVKLGREEPVASMDNSGKIIWAKHNEIQTVNIRSVGADVESLRHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAEKKSIRPTFSAERIFGGTVLAMCSNDFICFYDWAECRLIRRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVASYLDSGSPVDEQGVEDAFELLHEMSERVRTGIWVGDCFIYSNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLAGQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEDALEVATDPDYRFDLAIQLGRLEVAKSIATEVQSETKWKQLGELAMSNGKLELAEECLKQAMDLSGLLLLYSSLGDAEGISKLATLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLSKVNPKAAESLADPEEYPNLFDDWQVALAVESKAVETRGVYPPALEYVNQAGKSHITLVEAFRKLQMEEGDHPLENGDSNHEMTEQNGEEDYTEEQNGEEGSQEEAVVVDADSADGAVLINEW 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0172 815 ProSiteProfiles Trp-Asp (WD) repeats profile. 47 79 IPR001680 GO:0005515
Aed2g0172 815 PANTHER COATOMER 1 784 - -
Aed2g0172 815 SUPERFAMILY WD40 repeat-like 5 249 IPR036322 GO:0005515
Aed2g0172 815 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 208 - -
Aed2g0172 815 SMART WD40_4 126 167 IPR001680 GO:0005515
Aed2g0172 815 SMART WD40_4 40 79 IPR001680 GO:0005515
Aed2g0172 815 SMART WD40_4 270 310 IPR001680 GO:0005515
Aed2g0172 815 SMART WD40_4 170 209 IPR001680 GO:0005515
Aed2g0172 815 SMART WD40_4 83 123 IPR001680 GO:0005515
Aed2g0172 815 SMART WD40_4 3 37 IPR001680 GO:0005515
Aed2g0172 815 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 218 IPR001680 GO:0005515
Aed2g0172 815 Pfam Coatomer WD associated region 273 677 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Aed2g0172 815 PRINTS G protein beta WD-40 repeat signature 110 124 IPR020472 -
Aed2g0172 815 PRINTS G protein beta WD-40 repeat signature 154 168 IPR020472 -
Aed2g0172 815 PRINTS G protein beta WD-40 repeat signature 196 210 IPR020472 -
Aed2g0172 815 MobiDBLite consensus disorder prediction 762 779 - -
Aed2g0172 815 ProSiteProfiles Trp-Asp (WD) repeats profile. 133 176 IPR001680 GO:0005515
Aed2g0172 815 Gene3D - 1 252 IPR015943 GO:0005515
Aed2g0172 815 Gene3D - 504 712 - -
Aed2g0172 815 ProSiteProfiles Trp-Asp (WD) repeats profile. 90 132 IPR001680 GO:0005515
Aed2g0172 815 MobiDBLite consensus disorder prediction 762 807 - -
Aed2g0172 815 Pfam WD domain, G-beta repeat 172 208 IPR001680 GO:0005515
Aed2g0172 815 Pfam WD domain, G-beta repeat 129 167 IPR001680 GO:0005515
Aed2g0172 815 Pfam WD domain, G-beta repeat 86 123 IPR001680 GO:0005515
Aed2g0172 815 Pfam WD domain, G-beta repeat 43 79 IPR001680 GO:0005515
Aed2g0172 815 PANTHER COATOMER SUBUNIT BETA' 1 784 - -
Aed2g0172 815 PIRSF Beta'-COP 1 803 IPR016453 -
Aed2g0172 815 CDD WD40 11 303 - -
Aed2g0172 815 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 47 79 - -
Aed2g0172 815 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 90 124 - -
Aed2g0172 815 SUPERFAMILY WD40 repeat-like 179 407 IPR036322 GO:0005515
Aed2g0172 815 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 133 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0172 Aed-Chr2 1165688 1175802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0172 18 261 Miscellaneous Gene Families AT5G08390 25.610 1.96e-18 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0172 K17302 - gmx:100818132 1549.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0172 2 1165688 1175802 Aed2g0172 2 1165688 1175802 ECH
Aed1g1462 1 13249909 13260096 Aed2g0172 2 1165688 1175802 PCT