Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1462 ATGAAAAACATTTGGAAACTGTGGGCCCGGAGAGCCACGTGGCAAGCATGTCGTTGCCACCATTCCGTGCGTTTCCTCACCACCATGGACCATACGCCTCTCAGACTCGAAATCAAGCGAAAGCTTGCGCAAAGATCAGAGAGAGTGAAATGTGTGGATCTACATCCAACAGAGCCATGGATTCTGGCAAGTTTATACTCTGGAACTGTCTGTATCTGGAACTACCAATCTCAGACCATGGCCAAATCTTTTGAGGTTACCGAGTTACCAGTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATTCGTGTATATAACTACAACACAATGGATAAAGTCAAAGTATTCGAAGCACATACTGATTACATTAGGTGTGTGGCAGTTCATCCCACCCTTCCTTATGTGCTTTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAAAAAGGCTGGATCTGTACCCAGATATTTGAAGGCCATTCTCATTATGTCATGCAAGTAACATTTAATCCCAAAGACACAAACACCTTTGCTAGTGCATCTCTTGATCGGACAATAAAGATATGGAATCTTGGCTCTCCTGACCCTAATTTTACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCGTATTTAATCACTGGTTCTGATGATCACACTGCTAAGGTATGGGATTATCAGACCAAAGGTTGTGTCCAGACCCTAGAAGGTCACACACACAATGTGTCTGCTGTATGTTTTCATCCTGAACTTCCTATAATCATTACTGGTTCTGAGGATGGCACAGTACGCATATGGCACTCCACAACTTATAGACTTGAGAACACTTTAAACTATGGTCTTGAAAGAGTCTGGGCTATTGGATACTTGAAGAGTTCTCGTCGGGTTGTGATTGGCTATGATGAAGGAACAATTATGGTCAAACTTGGTCGAGAAGTACCTGTGGCTAGCATGGACAACAGTGGGAAAATTATTTGGTCTAAGCATAATGAAATTCAGACTGTCAATATAAAAAGTGTAGGAGCAGATGTAGAGGTTGCTGACGGAGAAAGGTTACCTTTAGCTGTTAAGGAGTTGGGCACCTGTGATCTCTACCCCCAAAATTTAAAGCACAATCCAAATGGGAGATTTGTTGTTGTATGTGGAGATGGTGAGTACATTATATACACTGCATTGGCATGGAGAAATAGGTCATTTGGTTCAGCACTTGAATTTGTTTGGTCTTCCGAGGGAGAATATGCTGTCAGAGAAAGTACATCGAAGATTAAAATTTTCAGCAAAAATTTCCAGGAAAAGAGGAGTGTCAGACCAACATTTTCAGCTGAAAGAATATTCGGTGGCACTTTACTGGCGATGTGCTCCAATGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGACGTCAATGTGAAAAACCTCTACTGGGCTGATAGTGGTGATCTAGTAACAATTGCTAGTGATACATCATTCTACATCCTGAAGTACAATCGTGATGTTGTTGTATCACATTTAGATAGTGGAAGACCTGTAGATGATGAAGGTGTTGAAGATGCTTTTGAGCTCTTACATGAAATGAATGAACGTGTTAGGACAGGCATCTGGGTTGGGGATTGCTTTATCTACAACAATTCCTCTTGGAGACTTAATTATTGTGTTGGTGGTGAGGTAACTACGATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAATGTTATGGGATACACACTGCTTTTAAGCTTGATTGAGTACAAGACACTTGTGATGCGTGGTGATTTGGAAAGGGCCAATGAAATTCTACCATCAATCCCTAAAGAGCATCATAACAGTGTGGCTCATTTCCTGGAATCACGAGGGATGGTAGAAGATGCTCTTGAAGTAGCTACTGACCCTGATTACAGATTTGATCTAGCAATACAGCTTGGAAAACTAGATGTTGCAAAGAGTATTGCAATAGAATTGCAGAGCGAGTCTAAATGGAAGCAGCTGGGAGAATTAGCTATGTCTACTGGAAAGTTAGAAATGGCTGAGGAATGTTTGAAGTATGCAATGGATTTGAGTGGCTTGTTACTGCTCTATTCTTCTTTAGGAGATGCTGAAGGAATATCAAAACTTGCAATCCTTGCTAAGGAGCAAGGGAAAAACAATGTTGCATTCCTCTGCTTATTTATGTTGGGTAAATTAGAAGACTGCCTTCAACTGTTGGTAGAAAGCAATCGAATTCCGGAGGCAGCTTTAATGGCTCGATCTTATCTCCCAAGTAAGGTCTCAGAGATAGTGGCAATTTGGAGAAAAGATCTCAATAAGGTTAATCCAAAAGCAGCTGAATCATTGGCTGATCCTGAAGAATATCCAAATTTGTTTGAAGACTGGCAAGTTGCACTTGCTGTCGAATCTAAAGCTGTGGAAACAAGGAATGTGTACCCTCCTGCAGAGCAGTACGTCAACCATGCTGACAAATCACGCATTACCCTTGTTGAAGCTTTCAGAAACATGCAGATTGAGGAAGGAGAGGAGCATCTGGAGAATGGGGACTCTACTCATGAGTTGACTGAACAAAATGAAGAAGAGCACTACACAGAGGCAGAGGAGCAGGAGGAAGGAAGCCAAGAGGAGGCAGTTGTAGTGGATGCCGATTCTACAGATGGTGCAGTACTCGTTAATGGTAACGAGGCTGAAGAAGAGTGGGGTACGAATAATGAAGGAGCCCCTTCTTGCACCACATCACTAGGTGCCATCAAGACAGTCTTCTCAAGGAGTCATGTGAAGAGATTTTGTGGACTGGTTGTTTGTTTCCTGGTGTTATGGTTTTGTAGTGCCCTGAATTTTGTCATTTTGCACGTGGTATGA 2976 0.419 MKNIWKLWARRATWQACRCHHSVRFLTTMDHTPLRLEIKRKLAQRSERVKCVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKGCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKSSRRVVIGYDEGTIMVKLGREVPVASMDNSGKIIWSKHNEIQTVNIKSVGADVEVADGERLPLAVKELGTCDLYPQNLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSEGEYAVRESTSKIKIFSKNFQEKRSVRPTFSAERIFGGTLLAMCSNDFICFYDWAECRLIYRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVVSHLDSGRPVDDEGVEDAFELLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVAHFLESRGMVEDALEVATDPDYRFDLAIQLGKLDVAKSIAIELQSESKWKQLGELAMSTGKLEMAEECLKYAMDLSGLLLLYSSLGDAEGISKLAILAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAAESLADPEEYPNLFEDWQVALAVESKAVETRNVYPPAEQYVNHADKSRITLVEAFRNMQIEEGEEHLENGDSTHELTEQNEEEHYTEAEEQEEGSQEEAVVVDADSTDGAVLVNGNEAEEEWGTNNEGAPSCTTSLGAIKTVFSRSHVKRFCGLVVCFLVLWFCSALNFVILHVV 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1462 991 MobiDBLite consensus disorder prediction 898 915 - -
Aed1g1462 991 PIRSF Beta'-COP 33 918 IPR016453 -
Aed1g1462 991 Gene3D - 621 829 - -
Aed1g1462 991 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 212 249 - -
Aed1g1462 991 Coils Coil 894 914 - -
Aed1g1462 991 ProSiteProfiles Trp-Asp (WD) repeats profile. 126 158 IPR001680 GO:0005515
Aed1g1462 991 PRINTS G protein beta WD-40 repeat signature 233 247 IPR020472 -
Aed1g1462 991 PRINTS G protein beta WD-40 repeat signature 275 289 IPR020472 -
Aed1g1462 991 PRINTS G protein beta WD-40 repeat signature 189 203 IPR020472 -
Aed1g1462 991 PANTHER COATOMER 33 905 - -
Aed1g1462 991 MobiDBLite consensus disorder prediction 879 897 - -
Aed1g1462 991 ProSiteProfiles Trp-Asp (WD) repeats profile. 212 255 IPR001680 GO:0005515
Aed1g1462 991 SMART WD40_4 205 246 IPR001680 GO:0005515
Aed1g1462 991 SMART WD40_4 35 74 IPR001680 GO:0005515
Aed1g1462 991 SMART WD40_4 249 288 IPR001680 GO:0005515
Aed1g1462 991 SMART WD40_4 119 158 IPR001680 GO:0005515
Aed1g1462 991 SMART WD40_4 77 116 IPR001680 GO:0005515
Aed1g1462 991 SMART WD40_4 162 202 IPR001680 GO:0005515
Aed1g1462 991 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 297 IPR001680 GO:0005515
Aed1g1462 991 Gene3D - 42 331 IPR015943 GO:0005515
Aed1g1462 991 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 126 158 - -
Aed1g1462 991 PANTHER COATOMER SUBUNIT BETA' 33 905 - -
Aed1g1462 991 CDD WD40 48 328 - -
Aed1g1462 991 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 211 IPR001680 GO:0005515
Aed1g1462 991 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 169 203 - -
Aed1g1462 991 MobiDBLite consensus disorder prediction 879 916 - -
Aed1g1462 991 Pfam Coatomer WD associated region 350 794 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Aed1g1462 991 SUPERFAMILY WD40 repeat-like 34 328 IPR036322 GO:0005515
Aed1g1462 991 Pfam WD domain, G-beta repeat 49 74 IPR001680 GO:0005515
Aed1g1462 991 Pfam WD domain, G-beta repeat 252 287 IPR001680 GO:0005515
Aed1g1462 991 Pfam WD domain, G-beta repeat 122 158 IPR001680 GO:0005515
Aed1g1462 991 Pfam WD domain, G-beta repeat 208 246 IPR001680 GO:0005515
Aed1g1462 991 Pfam WD domain, G-beta repeat 165 202 IPR001680 GO:0005515
Aed1g1462 991 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 256 287 - -
Aed1g1462 991 SUPERFAMILY WD40 repeat-like 258 531 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1462 Aed-Chr1 13249909 13260096 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1462 82 323 Miscellaneous Gene Families AT5G08390 25.000 2.43e-18 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1462 K17302 - gmx:106794271 1807.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1462 1 13249909 13260096 Aed1g1462 1 13249909 13260096 ECH
Aed1g1462 1 13249909 13260096 Aed2g0172 2 1165688 1175802 PCT