Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0106 ATGTCGTCTCTCAGTAGGGAATTGGTGTTCTTGATCTTGCAGTTTCTGGATGAGGAAAAGTTCAAGGAGACTGTGCACAAGCTTGAGCAGGAGTCAGGGTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCACAATGGCAATTGGGATGAGGTGGAGAAATACCTCTCTGGTTTTACAAAGGTGGATGATAATAGGTATTCTATGAAGATATTTTTTGAGATAAGGAAGCAGAAGTATCTGGAGGCTTTAGATAAGCATGAACGGTCCAAGGCTGTAGAAATATTGGTGAAGGATTTGAAAGTGTTTGCTACATTTAACGAAGAATTGTTCAAGGAAATCACGCAGCTTCTGACATTGGAAAATTTTAGGGAAAATGAACAATTGTCTAAGTATGGTGATACAAAGTCTGCACGAGCAATTATGTTGGTTGAGCTCAAAAAGCTCATTGAAGCAAATCCCTTATTTCGTGACAAATTGCAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTCATCAATCAAAGCCTAAATTGGCAGCATCAACTTTGCAAGAACCCACGGCCAAATCCTGACATAAAAACTCTTTTTGTGGATCACTCATGTGGACAACCAAATGGTGCACGGGCTCCTTCACCTGCTAATAACCCACTACTAGGCGCCTTACCAAAGGCTGGAGGATTTCCTCCACTTGGTGCACATGGGCCTACTCCAGCACCAGTGCCAACACCCCTGGCTGGTTGGATGTCAAATCCTACCACTGTGGCACATGCTGCTGTTTCTGGAGGTGGAGCTATAGGTCTTGGTGCTCCATCGATGCCTGCGGCTTTGAAGCATCCTAGGACCCCCCCAACTAATCCTTCTGTTGACTATCCATCTGGAGACTCAGATCATGTTGCTAAGAGAACAAGGCCAATGGGAATATCAGATGAGGTGAATCTACCTGTCAATGTGTTGTCAGCAACATTCCCAGGTCATGGTCAACATAGTCAAGCTTTTAATGCACCTGATGACATTCCTAAGACTGTTTTGCGAACTCTTAATCAGGGTTCATCTCCTATGAGCATGGATTTTCATCCGGTTCAACAATCTTTACTTCTTGTTGGTACAAATGTGGGGGACATTGCTTTGTGGGAGGTGGGTTCTAGGGAGCGGTTGGTCTCAAGGAATTTCAAAGTTTGGGATCTTAGTGCATGTTCAATGCCATTTCAGGCTGCTCTTGTCAAAGATCCGGGTGTTTCTGTCAACCGTGTGATTTGGAGTCCCGATGGTGCTTTGTTTGCATTTTCCCATCCAAATAAGCAACTATGCGTGATAACTTGTGGTGATGATAAAACCATTAAGGTATGGGATGCTGCTTCTGGTGCAAAGCAGTATACTTTTGAAGGTCATGAGGCTCCGGTTTATTCTGTCTGCCCACATTATAAAGAAAACATTCAGTTCATCTTTTCAACAGCATTAGATGGAAAAATAAAAGCATGGTTGTATGACAATTTGGGATCTCGTGTTGATTATGAAGCTCCTGGTCGTTGGTGCACAACCATGGCTTATAGTGCTGATGGTACAAGGCTCTTTTCATGTGGGACAAGCAAAGATGGGGAATCCTCCATTGTTGAGTGGAATGAAAGTGAAGGAGCTGTTAAAAGGACTTATCAAGGATTTCGTAAGCGATCTCTTGGTGTTGTGCAATTTGATACTACCAAAAATCGTTTTTTGGCTGCTGGTGATGATTTCTCCATCAAATTCTGGGATATGGACAATGTTCAGCTTTTAACAACTGTTGATGCTGATGGGGGTCTCCCTGCGAGCCCGCGCATTCGTTTCAACAAGGATGGAACTCTTTTAGCTGTCTCTGCAACTGAGAATGGAATTAAAATTTTAGCAAATGGGGATGGTATTCGTTTGTTGCGTACACTTGAAAATTCTTTATATGATGCATCAAGAGCATCAGAAGCCATGACAAAGAATGGGGATACACGAAACTTGGGTGATGTTAAACCTAGAATAAGTGAAGAATCCAATGACAAGTCAAAGATATGGAAGCTCACTGAAATCAATGAACCATCTCAATGTAGATCCTTGAAGCTACCAGAGAATGTAAGAGTAACAAAGATATCAAGGTTGATATATACAAATTCAGGTAATGCTATTCTGGCATTAGCATCAAATGCCATTCACCTGCTCTGGAAATGGCAGAGAAATGAGCGTAACTCGTCTGGCAAGGCCACTGCTAACTTGCAACCTCAGTTGTGGCAACCATCGAGTGGCATCCTGATGACAAATGACATTACTGATAGCAATCCTGAGGATGCTGTACCCTGCTTTGCGTTGTCCAAAAATGACTCGTATGTAATGTCTGCATCAGGAGGGAAAATATCTCTGTTCAATATGATGACTTTTAAGACTATGACAACTTTCATGCCTCCGCCACCTGCGGCAACCTTTCTTGCTTTCCATCCTCAGGATAACAATATTATTGCAATAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGGTTAAAAGTAAACTCAAAGGCCATACTAAAAGAATTACTGGTCTTGCTTTCTCTCATGTATTGAATGTGTTAGTGTCATCTGGAGCAGATGCTCAGATTTGTGTTTGGAACACTGATGGATGGGAAAAGCAGAAGTCTAGATTCTTGCAGCTTCCTCCTGGAAGAACACCACCGCAGTCCGATACTCGTGTACAGTTTCATCAAGATCAAATACAGTTCTTGGTTGTACATGAAACTCAACTCGCCATTTATGAAGCAACAAAACTAGAAGGTCTAAAGCAGTGGTTCCCGCGAGACTCATCTGCACCAATATCGCATGCAACTTTCTCATGTGATAGCCAGTTAGTGTATGCCAGCTTTTTAGATGCAACAATCTGTGTATTTAGTGCTTCAAACCTCAGATTACGGTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGTTCCAACATACAACCACTTGTAATCGCTGCACACCCACAAGAACCAAATCAGTTTGCTGTAGGACTGTCTGATGGTGGAGTTCATGTTTTTGAACCCCTTGAATCGGAAGGCAAGTGGGGTGTGCCTCCTCCTATTGAGAATGGATCAGCAAGCAATGTGGCAGCTACTTCAGTTGGACCTTCTTCAGATCAAGCTCAAAGATGA 3192 0.4245 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHERSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGALPKAGGFPPLGAHGPTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSMPAALKHPRTPPTNPSVDYPSGDSDHVAKRTRPMGISDEVNLPVNVLSATFPGHGQHSQAFNAPDDIPKTVLRTLNQGSSPMSMDFHPVQQSLLLVGTNVGDIALWEVGSRERLVSRNFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGALFAFSHPNKQLCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSATENGIKILANGDGIRLLRTLENSLYDASRASEAMTKNGDTRNLGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPENVRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKATANLQPQLWQPSSGILMTNDITDSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPPQSDTRVQFHQDQIQFLVVHETQLAIYEATKLEGLKQWFPRDSSAPISHATFSCDSQLVYASFLDATICVFSASNLRLRCRINPSSYLPASVSSNIQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSASNVAATSVGPSSDQAQR 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0106 1063 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 658 1063 IPR027728 GO:0006355
Aed2g0106 1063 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 429 IPR027728 GO:0006355
Aed2g0106 1063 SMART WD40_4 935 975 IPR001680 GO:0005515
Aed2g0106 1063 SMART WD40_4 984 1027 IPR001680 GO:0005515
Aed2g0106 1063 SMART WD40_4 403 453 IPR001680 GO:0005515
Aed2g0106 1063 SMART WD40_4 500 543 IPR001680 GO:0005515
Aed2g0106 1063 SMART WD40_4 546 586 IPR001680 GO:0005515
Aed2g0106 1063 SMART WD40_4 844 883 IPR001680 GO:0005515
Aed2g0106 1063 SMART WD40_4 456 497 IPR001680 GO:0005515
Aed2g0106 1063 SMART WD40_4 761 798 IPR001680 GO:0005515
Aed2g0106 1063 SMART WD40_4 801 841 IPR001680 GO:0005515
Aed2g0106 1063 SMART WD40_4 342 381 IPR001680 GO:0005515
Aed2g0106 1063 SUPERFAMILY Nucleoporin domain 924 1038 - -
Aed2g0106 1063 SMART Lish 4 36 IPR006594 GO:0005515
Aed2g0106 1063 MobiDBLite consensus disorder prediction 1034 1063 - -
Aed2g0106 1063 SUPERFAMILY WD40 repeat-like 344 441 IPR036322 GO:0005515
Aed2g0106 1063 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 420 888 IPR011047 -
Aed2g0106 1063 Gene3D - 706 1034 IPR015943 GO:0005515
Aed2g0106 1063 MobiDBLite consensus disorder prediction 281 301 - -
Aed2g0106 1063 MobiDBLite consensus disorder prediction 1045 1063 - -
Aed2g0106 1063 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 429 - -
Aed2g0106 1063 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Aed2g0106 1063 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 851 883 - -
Aed2g0106 1063 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 430 657 IPR027728 GO:0006355
Aed2g0106 1063 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Aed2g0106 1063 Pfam WD domain, G-beta repeat 416 453 IPR001680 GO:0005515
Aed2g0106 1063 Pfam WD domain, G-beta repeat 850 883 IPR001680 GO:0005515
Aed2g0106 1063 Gene3D - 318 532 IPR015943 GO:0005515
Aed2g0106 1063 ProSiteProfiles Trp-Asp (WD) repeats profile. 440 462 IPR001680 GO:0005515
Aed2g0106 1063 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 658 1063 - -
Aed2g0106 1063 SMART ctlh 34 92 IPR006595 -
Aed2g0106 1063 Gene3D - 533 647 IPR015943 GO:0005515
Aed2g0106 1063 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 430 657 - -
Aed2g0106 1063 ProSiteProfiles Trp-Asp (WD) repeats profile. 564 595 IPR001680 GO:0005515
Aed2g0106 1063 ProSiteProfiles Trp-Asp (WD) repeats profile. 851 892 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0106 Aed-Chr2 763100 771288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0106 448 614 Miscellaneous Gene Families AT5G08390 25.581 1.94e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0106 - - gmx:100782671 2058.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0106 2 763100 771288 Aed1g1529 1 13692247 13699918 ECH
Aed2g0106 2 763100 771288 Aed2g0106 2 763100 771288 ECH