Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1529 ATGTCATCTCTCAGTAGGGAGTTGGTGTTCTTGATCTTGCAGTTTCTGGATGAAGAAAAGTTCAAAGAAACTGTTCACAAGCTTGAGCAGGAGTCTGGGTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCACAATGGTAATTGGGATGAAGTTGAGAGGTACCTCTCTGGTTTCACCAAAGTGGATGATAATAGGTATTCTATGAAGATATTTTTTGAGATAAGGAAGCAGAAGTACCTGGAGGCATTAGATAAGCATGATCGATCCAAGGCTGTAGAAATATTAGTGAAGGATTTGAAAGTCTTTGCCACATTTAATGAAGAACTGTTTAAGGAAATCACACAGCTTTTGACATTGGAGAATTTTAGGGAAAACGAGCAATTGTCTAAGTATGGTGATACAAAGTCTGCAAGGGCAATCATGTTGGTTGAGCTCAAAAAGCTGATTGAGGCCAATCCCTTATTTCGTGACAAATTGCAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTCATCAATCAAAGCTTGAATTGGCAGCACCAACTTTGTAAGAATCCACGGCCAAATCCAGATATAAAAACTCTGTTTGTGGATCATTCATGTGGACAACCAAATGGTGCACGGGCTCCATCACCTGCTAATAATCCACTACTAGGATCATTACCAAAGGCTGGAGGATTTCCTCCTCTTGGTGCACACGGGCCTTTTCAACCTACTCCAGCCCCTGTGCCAACACCCCTGGCTGGTTGGATGTCAAATCCAACCACTGTAGCACATCCTGCAGTTTCTGGGGGAGCTATAGGTCTTGGTGCGCCATCAATCCCTGCTGCTTTGAAGCACCCTAGGACCCCCCCAACTAATCCTTCTGTTGACTATCCATCTGGTGATTCAGATCATGTTTCTAAGAGAACAAGACCAATGGGAATTTCAGATGAGGTAAATCTGCCTGTCAATGTTTTGTCAGCAACATTCCCTGGTCATGGTCATGGTCAGGCTTTTAATGCACCTGATGACTTGCCAAAGACTGTCATGCGAACTCTGAACCAAGGCTCATCACCTATGAGCATGGACTTTCATCCAGTTCAACAGACACTGCTTCTTGTTGGTACAAATGTGGGGGACATTGCTTTGTGGGAAGTGGGCTCTAGGGAGCGGTTGCTCATGAGGAATTTTAAAGTTTGGGATCTTAGTGCTTGTTCAATGCCCTTTCAGGTTGTCCTTTCTCACCTACCTTTATCCATTGATATTTGTGATGAATATTTGTACCAAACCCTGAAACTAATTGATGCTCATGTTGGTGGAGTAAATGATCTAGCGTTTTCTCACCCAAATAAGCAACTATGTGTCACAACCTGTGGTGATGATAAGACCATTAAGGTTTGGGATGCTGCTACGGGTGCAAAACAGTATACTTTCGAAGGTCATGAGGCTCCTGTTTATTCTGTCTGTCCGCATTATAAAGAAAACATTCAGTTCATCTTTTCAACGGCATTAGATGGAAAGATAAAGGCATGGTTGTATGATAATTTGGGATCTCGTGTTGATTATGAAGCTCCTGGACGTTGGTGTACAACCATGTCCTATAGTGCTGATGGTACAAGACTCTTTTCATGTGGAACAAGTAAGGATGGGGAATCCTCTATTGTTGAGTGGAATGAAAGTGAAGGAGCTGTGAAAAGGACTTATCAAGGATTTCGGAAACGATCTTTGGGTGTTGTACAATTTGATACAACCAAAAATCGGTATTTGGCTGCAGGCGATGATTTCTCCATTAAATTCTGGGATATGGACAATATTCAGCTTTTGACAACTGTTGATGCTGATGGTGGTCTCCCTGCAAGCCCACGAATCCGTTTTAACAAGGATGGAGCTCTTTTAGCTGTTTCTGCAAATGAGAATGGAATTAAAATCTTAGCCAATGCAGATGGTATTCGTTTGTTACGCACATTAGAGAATTCTTTATATGATACATCAAGAACATCAGAAGCCATGACAAAGCCTACAATAAATCCAATTTCAGCAGCAGCCGCTGCTGCAACTAGTGCTGCACTTGCAGAGAGGGCCTCATCTGTGGTAGCTATTACTGCAATGAATGGGGATGCCCGAAACTTGGGTGATGTTAAACCTAGAATAAGTGAAGAATCCAATGATAAGTCGAAGATATGGAAGCTCACTGAAATCAATGAACCATCTCAATGTAGATCCTTGAAGCTACCTGAGAATGTCAGAGTGAACAAGATATCAAGGTTGATATATACTAATTCAGGTAATGCTATCCTGGCATTAGCTTCAAATGCCATTCATCTGCTCTGGAAATGGCAGCGAAATGACCGTAATTCAACTGGCAAGGCCACTGCCAGTGTGCAACCCCAGTTGTGGCAACCTTCTAGTGGCATCCTGATGACTAACGACATTACTGATAGCAATACTGAGGATGCTGTTCCCTGCTTTGCTCTGTCGAAAAATGATTCTTATGTAATGTCAGCATCAGGAGGGAAGATTTCTCTGTTCAATATGATGACTTTTAAGGTTAAAAGTAAACTCAAAGGCCATACTAAAAGAATAACTGGTCTGGCTTTTTCTCATGTATTGAATGTGCTAGTTTCATCTGGGGCAGATGCTCAGATTTGTGTGTGGAATACTGACGGATGGGAAAAGCAGAAGTCTAGATTCTTGCAACTTCCTGCTGGGAGGACTCCACCAGCACAGGCAGATACCCGTGTACAGTTTCATCAGGATCAGATCCGCTTCTTGGTTGTACATGAAACTCAGCTTGCCATTTATGAAGCAACAAAGCTAGAATGTTTAAAGCAGTGGTTCCCGCGAGATTCATCTGCACCAATATCGCATGCAACTTTCTCATGTGATAGCCAGCTCATATATGCCAGCTTTTTAGATGCAACAGTCTGTGTATTTAGTGTATCAAACCTTAGATTACGCTGTCGAATCAATCCTTCTGCTTATCTTTCTGCAAGTGTCAGTTCTAACGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAACCAGTTTGCTGTAGGACTGTCAGATGGTGGAGTTCATGTGTTTGAGCCCCTTGAGTCTGAAGGAAAATGGGGTGTGCCTCCACCCATTGAGAATGGGTCAACGAGCAATATGGCACCTACTTCAGTTGGAGCTTCTCCAGATGAGGCTCAGAGATGA 3195 0.425 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHPAVSGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGDSDHVSKRTRPMGISDEVNLPVNVLSATFPGHGHGQAFNAPDDLPKTVMRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMPFQVVLSHLPLSIDICDEYLYQTLKLIDAHVGGVNDLAFSHPNKQLCVTTCGDDKTIKVWDAATGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMSYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKDGALLAVSANENGIKILANADGIRLLRTLENSLYDTSRTSEAMTKPTINPISAAAAAATSAALAERASSVVAITAMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTGKATASVQPQLWQPSSGILMTNDITDSNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEATKLECLKQWFPRDSSAPISHATFSCDSQLIYASFLDATVCVFSVSNLRLRCRINPSAYLSASVSSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSTSNMAPTSVGASPDEAQR 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1529 1064 Gene3D - 340 545 IPR015943 GO:0005515
Aed1g1529 1064 MobiDBLite consensus disorder prediction 283 305 - -
Aed1g1529 1064 Pfam WD domain, G-beta repeat 427 465 IPR001680 GO:0005515
Aed1g1529 1064 Pfam WD domain, G-beta repeat 849 883 IPR001680 GO:0005515
Aed1g1529 1064 SMART Lish 4 36 IPR006594 GO:0005515
Aed1g1529 1064 SMART WD40_4 424 465 IPR001680 GO:0005515
Aed1g1529 1064 SMART WD40_4 844 883 IPR001680 GO:0005515
Aed1g1529 1064 SMART WD40_4 512 555 IPR001680 GO:0005515
Aed1g1529 1064 SMART WD40_4 935 976 IPR001680 GO:0005515
Aed1g1529 1064 SMART WD40_4 804 841 IPR001680 GO:0005515
Aed1g1529 1064 SMART WD40_4 343 382 IPR001680 GO:0005515
Aed1g1529 1064 SMART WD40_4 558 598 IPR001680 GO:0005515
Aed1g1529 1064 SMART WD40_4 989 1028 IPR001680 GO:0005515
Aed1g1529 1064 SMART WD40_4 468 509 IPR001680 GO:0005515
Aed1g1529 1064 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 427 893 IPR011047 -
Aed1g1529 1064 SUPERFAMILY WD40 repeat-like 750 1029 IPR036322 GO:0005515
Aed1g1529 1064 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Aed1g1529 1064 ProSiteProfiles Trp-Asp (WD) repeats profile. 576 607 IPR001680 GO:0005515
Aed1g1529 1064 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 847 1064 IPR027728 GO:0006355
Aed1g1529 1064 Gene3D - 747 1036 IPR015943 GO:0005515
Aed1g1529 1064 SMART ctlh 34 92 IPR006595 -
Aed1g1529 1064 MobiDBLite consensus disorder prediction 1032 1064 - -
Aed1g1529 1064 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 851 883 - -
Aed1g1529 1064 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Aed1g1529 1064 PANTHER TOPLESS-LIKE PROTEIN 1 412 - -
Aed1g1529 1064 MobiDBLite consensus disorder prediction 1042 1064 - -
Aed1g1529 1064 PANTHER TOPLESS-LIKE PROTEIN 847 1064 - -
Aed1g1529 1064 PANTHER TOPLESS-LIKE PROTEIN 427 846 - -
Aed1g1529 1064 ProSiteProfiles Trp-Asp (WD) repeats profile. 431 474 IPR001680 GO:0005515
Aed1g1529 1064 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 412 IPR027728 GO:0006355
Aed1g1529 1064 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 427 846 IPR027728 GO:0006355
Aed1g1529 1064 Gene3D - 546 657 IPR015943 GO:0005515
Aed1g1529 1064 ProSitePatterns Trp-Asp (WD) repeats signature. 452 466 IPR019775 -
Aed1g1529 1064 ProSiteProfiles Trp-Asp (WD) repeats profile. 851 892 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1529 Aed-Chr1 13692247 13699918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1529 433 642 Miscellaneous Gene Families AT5G08390 23.256 1.38e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1529 - - gmx:100790282 1996.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0106 2 763100 771288 Aed1g1529 1 13692247 13699918 ECH
Aed1g1529 1 13692247 13699918 Aed1g1529 1 13692247 13699918 ECH