Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2729 ATGAATATAGTAGTAAGCTCTGGCACCACTCTAATCCTTCTTCTCTTCACCATCCTCACACTCCTCCTCCCACACCATAAGGCCAACGGTGCCACATGTCACCCCGACGAAGAGGCGGGCCTATTGGGCTTCAAATCCGGCATCCGATCCGACCCGTCTGGCATGTTAACGAATTGGATACCGGGTACGGATTGCTGCAAATGGAACGGAGTAGAATGTCACTTTAACAGCACCCGAGTCCAAAGGCTCTCCCTGACGGGTCAATTTGACACTAAACCCGAATCCATCTTATCGGGTATAATCTCACCCACTCTCTCGAAACTCAAACTTCTTGATGGACTATACCTCATAGACCTTCAAAACATTTCTGGTCCCTTCCCAACCTTTCTTTTCCAACTTCAAAATCTCGAATATATCTATTTAGAAAACAACAAGCTCTCGGGTCCAATACCTGAAAACATTGGTAACATGACCAAATTAGGGGCACTTAGTTTAACCGGTAACCGCTTCACCGGAACCATACCGAGTTCAGTCGTCGAGTTGACTCAGCTCACTCAGCTCAAACTGGGTAACAATTTTCTCACCGGAACAGTTCCCAGAGGAATAGCCAAGCTCGTTAATTTAACTTATCTGAGTCTTGAAGGGAACCAACTCCAAGGTACCATACCAGATTTTTTATCGTCTCTCACCGACCTGAGAATACTCAATTTTTCACATAACAAATTTTCCGGGAAAGTCCCGAACTCGATTTCTACCCTGGCGCCGAAACTGCAGTACTTGGAGCTAGGACACAACATGCTTTCTGGGAAAATTCCTGATTTTCTGGGAAAATTCAAGGCATTGGACACGCTGGACCTTTCGTGGAACAAGTTTTCGGGAACGGTGCCTTCGAGTTTTAAGAACCTGACAAAGATCTTCAACCTGAACCTCTCCAACAACCTCCTGGTGGATCCGTTTCCGGAGCTGAACGTGAAGGGGATCGAATCTTTGGACTTGTCGAACAACAGTTTTCACCTGGGGAACATTCCCAAGTGGGTGGCTTCGTCGCCGATTATATTCTCTCTCAAGCTTGTGAATTGCGGCATAAAGATGAAGCTCGAGGATTTCAAGCCTTTGGAGACTCAATTCTATGATTTTATTGATCTTTCCGAGAACGAAATTACAGGAAGTGCGATTGGATTGGTGAATAGTACGGAGTATTTGGTGGGGTTTTGGGCTTCAGGGAATAAGTTGAAGTTTGATTTGGGGAAGTTGAAGTTTGGACAGAGGTTTAAGTTTTTGGATCTGTCGCGTAATTCGGTGTTTGGAAAGGTTCCGAATAATGTTGTCGGGCTTGAGAAGTTGAATGTTAGTTATAATCATCTCAGTGGTAAGCTTCCGAAGACTAATTTTCCGGCAAGTGCTTTTGTCGGAAATGATTGTCTATGTGGTTCTCCTTTACCACCTTGCAAGAAAGCCAAAGCGCAGTAG 1470 0.451 MNIVVSSGTTLILLLFTILTLLLPHHKANGATCHPDEEAGLLGFKSGIRSDPSGMLTNWIPGTDCCKWNGVECHFNSTRVQRLSLTGQFDTKPESILSGIISPTLSKLKLLDGLYLIDLQNISGPFPTFLFQLQNLEYIYLENNKLSGPIPENIGNMTKLGALSLTGNRFTGTIPSSVVELTQLTQLKLGNNFLTGTVPRGIAKLVNLTYLSLEGNQLQGTIPDFLSSLTDLRILNFSHNKFSGKVPNSISTLAPKLQYLELGHNMLSGKIPDFLGKFKALDTLDLSWNKFSGTVPSSFKNLTKIFNLNLSNNLLVDPFPELNVKGIESLDLSNNSFHLGNIPKWVASSPIIFSLKLVNCGIKMKLEDFKPLETQFYDFIDLSENEITGSAIGLVNSTEYLVGFWASGNKLKFDLGKLKFGQRFKFLDLSRNSVFGKVPNNVVGLEKLNVSYNHLSGKLPKTNFPASAFVGNDCLCGSPLPPCKKAKAQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2729 489 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Aed1g2729 489 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 12 485 - -
Aed1g2729 489 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 12 485 IPR045273 -
Aed1g2729 489 SMART LRR_typ_2 133 157 IPR003591 -
Aed1g2729 489 SMART LRR_typ_2 442 471 IPR003591 -
Aed1g2729 489 SMART LRR_typ_2 181 204 IPR003591 -
Aed1g2729 489 SMART LRR_typ_2 278 301 IPR003591 -
Aed1g2729 489 SMART LRR_typ_2 205 229 IPR003591 -
Aed1g2729 489 Gene3D Ribonuclease Inhibitor 32 254 IPR032675 -
Aed1g2729 489 Gene3D Ribonuclease Inhibitor 255 489 IPR032675 -
Aed1g2729 489 SUPERFAMILY L domain-like 63 388 - -
Aed1g2729 489 SUPERFAMILY L domain-like 380 460 - -
Aed1g2729 489 Pfam Leucine Rich Repeat 232 253 IPR001611 GO:0005515
Aed1g2729 489 Pfam Leucine Rich Repeat 135 156 IPR001611 GO:0005515
Aed1g2729 489 Pfam Leucine rich repeat 255 315 IPR001611 GO:0005515
Aed1g2729 489 Pfam Leucine rich repeat 160 218 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2729 Aed-Chr1 22595027 22596496 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2729 104 478 Receptor kinase-like Gene Family AT3G56370 30.175 1.57e-36 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2729 - - gmx:100305447 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2729 1 22595027 22596496 Aed1g2729 1 22595027 22596496 ECH
Aed1g2729 1 22595027 22596496 Aed8g1873 8 23423007 23423531 ECH
Aed1g2729 1 22595027 22596496 Aed8g0935 8 8089724 8092050 ECH
Aed1g2729 1 22595027 22596496 Aed4g0164 4 1211393 1215386 ECH