Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2330 ATGGGCAGGACCAAGAGCAAAAAGTCTGAAGCTTTGGCTCTTCTCCTTCTCTTGTTGTCTCTTGTTGGAGGCTCTGACGCAGGTGGTGGCATAGCAATATACTGGGGCCAAAACGGGAACGAGGGAACCCTCTCAGAAGCATGCGCCACAGGCAAATACACTCACGTCAACATTGCTTTTCTCAACAAATTCGGCAATGCCGGCCAAACCCCCGAAATGAACCTCGCCGGTCACTGCAACCCCGCCGTAACTAACTCCTGCACTAAATTCAGCGCCGAAATCAAGGACTGCCAAACCAAAGGCATCAAGGTCCTTCTTTCAATAGGTGGCGGCATCGGAAGCTACTCTCTGGCCTCCGTCGAAGACGCCAGAAACGTTTCAGCGTTTCTGTGGAACACTTTCTTGGGAGGCAGATCATCATCATCTCCAAGGCCACTAGGTGATGCTGTGTTGGACGGCATAGATTTCGACATCGAACTTGGCTCAACGCAAAACTACGAGCACCTTGCACGTTTTCTGAAGGAGTATAATGGGGTTGCAGGGAAGAGGGTGTACCTAAGTGCTGCTCCTCAGTGTCCAATTCCTGATAGGTTCTTGGGCACTGCCCTTAACACTGGCCTATTTGACTTTGTTTGGGTTCAGTTCTACAATAACCCTCCGTGTCACTATGCTAATGGGAACATCACTAACCTTGTGAATTCTTGGAACCGGTGGACTAGTACGGTGCCTGCTGGGAAGATATTCTTGGGGCTGCCCGCCGCTCCGGCCGCCGCGGGAAGCGGTTTCGTTCCGGCGGATGTGTTGACATCTCAGATCCTGCCTGTGATTAAGAACTCGCCGAAATATGGTGGGGTCATGCTCTGGTCAAGATTCTTTGATGTCCAGAATGGGTATAGTACTCAGATTATTGGCAGCGTGTGA 921 0.5114 MGRTKSKKSEALALLLLLLSLVGGSDAGGGIAIYWGQNGNEGTLSEACATGKYTHVNIAFLNKFGNAGQTPEMNLAGHCNPAVTNSCTKFSAEIKDCQTKGIKVLLSIGGGIGSYSLASVEDARNVSAFLWNTFLGGRSSSSPRPLGDAVLDGIDFDIELGSTQNYEHLARFLKEYNGVAGKRVYLSAAPQCPIPDRFLGTALNTGLFDFVWVQFYNNPPCHYANGNITNLVNSWNRWTSTVPAGKIFLGLPAAPAAAGSGFVPADVLTSQILPVIKNSPKYGGVMLWSRFFDVQNGYSTQIIGSV 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2330 306 SUPERFAMILY (Trans)glycosidases 28 302 IPR017853 -
Aed1g2330 306 CDD GH18_hevamine_XipI_class_III 29 304 IPR045321 -
Aed1g2330 306 Gene3D Glycosidases 29 306 - -
Aed1g2330 306 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 151 159 IPR001579 GO:0004553|GO:0005975
Aed1g2330 306 PANTHER ENDOCHITINASE 6 306 - -
Aed1g2330 306 PANTHER ACIDIC ENDOCHITINASE 6 306 - -
Aed1g2330 306 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 29 306 IPR001223 GO:0005975
Aed1g2330 306 Pfam Glycosyl hydrolases family 18 31 291 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2330 Aed-Chr1 19322818 19323738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2330 7 306 Glycoside Hydrolase AT5G24090 63.787 7.22e-143 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2330 K01183 - gmx:100818728 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2330 1 19322818 19323738 Aed1g2330 1 19322818 19323738 ECH
Aed7g0681 7 5054364 5055757 Aed1g2330 1 19322818 19323738 PCT