Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2288 ATGGCACTGGCTTCTGTTCCAAAAGTGGTATTTGGTTTAATTGCATTTGCAATCTTTTGGGTGCTAGCAGTTTTCCCAGCTGTGCCTTTTCTACCCATTGGGAGGACTGCAGGGTCCCTCCTTGGTGCCATGCTTATGGTCTTATTCCAAGTTATTACTCCAGATGATGCTTATGACACAATTGATCTTCCGATTCTTGGTCTTCTTTTTGGGACAATGGTTGTCAGCACTTATCTTGAAAGAGCAGACATGTTTAAGTATATAGGGAAGTTGCTCGCTTGGAAAAGTAGAGGTGCAAAGGACTTACTTTGTAGGATATGTATTATTTCTGCTGTCTTAAGTGCTCTTTTCACAAATGACACCTCGTGTGTTGTTTTGACTGAATTCATACTGAAAATTGCAAGGCAGCATAACCTCCCTCCAACCCCCTTCCTACTTGCCCTTGCTTCAAGTGCTAATATTGGATCCTCAGCAACTCCAATTGGCAACCCCCAAAACCTGGTTATAGCTGTTCAGAGTAAAATATCATTTGGGGATTTTCTTATTGGTATTCTTCCTGCTATGGTGGCAGGAGTTGTAGCAAATGCTATAATTCTCCTAATAATGTTTTGGAAATTATTATCTGTTCATAAGGTTGAAGAAGATGCAGGTGCTGAAGGTGTGGTGGAGGAGGAGTATGATTCCCATCGGTTTTCTCCAGCCACAATGTCTCATTATTCATCCTTGAATTCTCAAGAATGGAATTTCCAACTTGATGCTATTAGTGTTCATAACTCTCCCCAGGTTCAGATTCTAAGAAACCGATCAATTGCAAATGCAAGTGAAGGTAATGGGGTTTCTAGCAACACTTTTGATACTGCAAGAATCTCGAGTGTATCAAGGGATGGAACAAATGGTGTGGCATCTCTGACAAAGGAGGAAACTAGCCCTTCAAATTTGTCAGCAGCAGTAGATACACTTATTCCCCCTTCAGAAAAGAAAAACAATGTTATCATAAAATGGAAAAGGGTACTGTGGAAGTCTTGTGTTTACATCATCACAGTTGGAATGTTGGTTGCTTTACTTCTAGGTTTAAATATGTCATGGACTGCAATTACTGCTGCACTTGCTCTCATAGTTCTTGATTTCAAAGATGCTAGACCATGTTTAGAGAAGGTTTCATATTCACTTTTGATATTCTTTTGTGGAATGTTTATCACAGTAGATGGCCTCAATAAAACTGGAATTCCAAGTACTCTATGGGACATAATGGAGCCATATTCTCGTGTTGATAGTGCTAGTGGAGTTGCAGTACTTGCAGTTGTCATACTTGTCCTATCAAATTTGGCTTCAAATGTACCAACAGTTCTCTTGCTTGGAGGAAGGGTAGCAGCCTCAGCTGCTGCAATATCCAAAGCAGATGAGAAGAAAGCATGGCTTATATTGGCTTGGGCCAGCACCATATCAGGAAATCTCTCACTGTTGGGATCAGCTGCTAACTTGATAGTGTGTGAACAAGCTATTCGTGCTCCAAACCTACCATACACATTAACCTTCTGGAGTCATCTCAAATTTGGCCTTCCTTCCACAATCATAGTCACTGCTATTGGTTTGACATTCATAAGATGA 1608 0.4067 MALASVPKVVFGLIAFAIFWVLAVFPAVPFLPIGRTAGSLLGAMLMVLFQVITPDDAYDTIDLPILGLLFGTMVVSTYLERADMFKYIGKLLAWKSRGAKDLLCRICIISAVLSALFTNDTSCVVLTEFILKIARQHNLPPTPFLLALASSANIGSSATPIGNPQNLVIAVQSKISFGDFLIGILPAMVAGVVANAIILLIMFWKLLSVHKVEEDAGAEGVVEEEYDSHRFSPATMSHYSSLNSQEWNFQLDAISVHNSPQVQILRNRSIANASEGNGVSSNTFDTARISSVSRDGTNGVASLTKEETSPSNLSAAVDTLIPPSEKKNNVIIKWKRVLWKSCVYIITVGMLVALLLGLNMSWTAITAALALIVLDFKDARPCLEKVSYSLLIFFCGMFITVDGLNKTGIPSTLWDIMEPYSRVDSASGVAVLAVVILVLSNLASNVPTVLLLGGRVAASAAAISKADEKKAWLILAWASTISGNLSLLGSAANLIVCEQAIRAPNLPYTLTFWSHLKFGLPSTIIVTAIGLTFIR 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2288 535 PRINTS Arsenical pump membrane protein signature 109 133 IPR000802 GO:0015105|GO:0015700|GO:0016021
Aed1g2288 535 PRINTS Arsenical pump membrane protein signature 182 205 IPR000802 GO:0015105|GO:0015700|GO:0016021
Aed1g2288 535 CDD YbiR_permease 28 534 - -
Aed1g2288 535 PANTHER TRANSPORTER ARSB-RELATED 1 535 - -
Aed1g2288 535 PANTHER TRANSPORTER ARSB-RELATED 1 535 - -
Aed1g2288 535 Pfam Citrate transporter 27 481 IPR004680 GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2288 Aed-Chr1 19014667 19018689 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2288 - - gmx:100781849 927.932
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2288 1 19014667 19018689 Aed7g0610 7 4515843 4520199 ECH
Aed1g2288 1 19014667 19018689 Aed1g2288 1 19014667 19018689 ECH
Aed7g0610 7 4515843 4520199 Aed1g2288 1 19014667 19018689 PCT
Aed1g2288 1 19014667 19018689 Aed7g0612 7 4522031 4524726 PCT