Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g2016 ATGAAGCTTCGGAGATCTTCCCTGTGCGTCTTTCTAGGGTTTCTGGTGCTGTTCCTTTCGTCGCCGTCAATGGCCAAATTCGTGGTGGAGAAGAACAGCTTGACGGTGACGTCGCCGGAAAACATCAAGGGCACGCACGACAGCGCGATTGGCAACTTCGGGATACCCCAATACGGAGGCAGCATGGCTGGGAACGTATTGTACCCTAAGGATAACATAAAGGGTTGCAAGGAGTTCGATGAGTTTGGGATTTCCTTCAAATCCAAACCCGGTGCTCTTCCCACTATCGTTTTGCTCGATCGAGGAAGTTGCTTCTTTGCTTTGAAGGTATGGAATGCACAGAAGGCTGGAGCTTCTGCTGTTCTTGTTGCAGATGATATTGAGGAAAAGTTGATAACCATGGACACTCCTGAGGAGGATGGGTCGTCTGCAAAATACATAGAGAACATAACGATACCATCTGCTCTCATTGAGAAAAGTTTTGGTGTAAAGTTGAAGGATGCCATAAGTAATGGGGATATGGTCAACGTAAATCTTGATTGGAGAGAGGCTGTCCCCCACCCGGACGACCGTGTGGAGTATGAATTGTGGACCAACAGCAATGATGAGTGTGGAGTTAAATGTGACATGTTGATGGAATTTGTGAAAGATTTTAAGGGTGCAGCACAGATATTGGAGAAAGGTGGTTATACTCAATTTACACCCCATTATATAACTTGGTACTGTCCTCAGGCATTCACATTAAGCAAACAGTGCAAGTCCCAGTGCATAAATCATGGAAGATATTGTGCTCCAGATCCTGAGCAAGATTTCAGCACTGGTTATGATGGGAAAGATGTGGTTATTGAAAATTTAAGGCAGCTATGTGTTTTCAAGGTGGCAAATGAAACCAAAAAGCCTTGGGTGTGGTGGGACTACGTCACTGATTTTCAAATTAGATGCCCAATGAAGGAGAAGAAGTATAACAAGAAATGCGCAGATGCTGTCATTGAATCACTTGGCCTTGATATTAAAAAGATTGAAAGGTGCATGGGAGATCCAAATGCTGATTCTGAAAATTCTGTTTTGAAAGAAGAGCAAGATGCCCAAGTTGGGAAGGGGTCACGAGGTGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAGGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATCTGTGCTGGTTTTGAAGAAACTACTGAACCAGCTGTTTGTTTGAGCAGTGAGGTGGAGACAAATGAGTGTTTGGAGAATAATGGTGGTTGTTGGAAGGATAAAGAAGCTAATATCACTGCATGCAAGGATACGTTCCGTGGGAGAGTATGCGAATGCCCCTTGGTGGATGGTGTGCAGTTCAAAGGAGATGGTTATACAACCTGTGCAGCTAGTGGACCTGGGAGGTGCAAGATTAACAATGGCGGTTGTTGGCATGACGCTCGGAATGGACATGCATATTCTGCTTGTTTGGATGATGGAGGGGTTAAATGCCAGTGTCCGGCAGGCTTTAAAGGTGATGGTGTCAAAAATTGTGAAGACATTGATGAATGCAAAGAGAAGAAAGCTTGTCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGAAGCTATGACTGCACTTGTAGTGGGGATCTTTTGTATATAAGGGACCATGATACTTGCATAAGTAAAACTGCCAGCAATCAAGGGGGAAAATCAGCTTGGGCTGCTTTTTGGGTTATTTTAACTGGCCTAGTTGTGGCTGCTGCAGGGGCATACCTTGTGTACAAATATAGAATAAGGTCATATATGGATTCTGAAATCAGAGCCATCATGGCACAGTACATGCCCTTGGACAGCCAAGGAGAAGTTGTAAATCACGTGCATGAAGAAAGAGCGTGA 1896 0.443 MKLRRSSLCVFLGFLVLFLSSPSMAKFVVEKNSLTVTSPENIKGTHDSAIGNFGIPQYGGSMAGNVLYPKDNIKGCKEFDEFGISFKSKPGALPTIVLLDRGSCFFALKVWNAQKAGASAVLVADDIEEKLITMDTPEEDGSSAKYIENITIPSALIEKSFGVKLKDAISNGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYTQFTPHYITWYCPQAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVIENLRQLCVFKVANETKKPWVWWDYVTDFQIRCPMKEKKYNKKCADAVIESLGLDIKKIERCMGDPNADSENSVLKEEQDAQVGKGSRGDVTILPTLVVNNRQYRGKLEKGAVMKAICAGFEETTEPAVCLSSEVETNECLENNGGCWKDKEANITACKDTFRGRVCECPLVDGVQFKGDGYTTCAASGPGRCKINNGGCWHDARNGHAYSACLDDGGVKCQCPAGFKGDGVKNCEDIDECKEKKACQCPECSCKNTWGSYDCTCSGDLLYIRDHDTCISKTASNQGGKSAWAAFWVILTGLVVAAAGAYLVYKYRIRSYMDSEIRAIMAQYMPLDSQGEVVNHVHEERA 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g2016 631 SMART egfca_6 518 560 IPR001881 GO:0005509
Aed1g2016 631 ProSitePatterns EGF-like domain signature 2. 502 516 IPR000742 -
Aed1g2016 631 ProSitePatterns Calcium-binding EGF-like domain signature. 518 544 IPR018097 GO:0005509
Aed1g2016 631 Pfam Complement Clr-like EGF-like 501 521 IPR026823 -
Aed1g2016 631 Gene3D Laminin 523 560 - -
Aed1g2016 631 Gene3D Laminin 472 522 - -
Aed1g2016 631 SUPERFAMILY PA domain 77 144 IPR046450 -
Aed1g2016 631 CDD PA_VSR 52 179 - -
Aed1g2016 631 Gene3D Laminin 411 467 - -
Aed1g2016 631 CDD EGF_CA 518 546 - -
Aed1g2016 631 Pfam PA domain 84 164 IPR003137 -
Aed1g2016 631 PANTHER VACUOLAR-SORTING RECEPTOR-LIKE PROTEIN 17 610 - -
Aed1g2016 631 Gene3D - 24 188 - -
Aed1g2016 631 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 17 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g2016 Aed-Chr1 17003169 17008076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g2016 25 631 Miscellaneous Gene Families AT2G14740 83.196 0.0 1082
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g2016 - - gmx:100776184 1246.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g2016 1 17003169 17008076 Aed1g2016 1 17003169 17008076 ECH
Aed11g1949 11 22228268 22232559 Aed1g2016 1 17003169 17008076 PCT