Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1949 ATGAAGGTGGTTTGGAGATGGTTGTTTGTGGTTGTTGTGTTGCCTGTGTCAGTAATGGGTCGATTCGTGGTGGAGAAGAACAGCCTGAGAGTGACATCGCCGGACAAAATAAGAGGCACACACGATAGTGCCATTGGCAACTTCGGAATACCTCAATACGGTGGCAGCATGGCCGGGAATGTCGTTTACCCTAAGGATAACAAAAAAGCTTGTAAAGACTTCGACGACTTTGGGATTTCATTCAAATCAACCCCCGGTGCTCTTCCCACCATTGTTCTACTCGATCGCGGAAGTTGCTTCTTTGCTTTGAAGGTCTGGAATGCCCAGAAGGCTGGAGCTTCTGCGGTTCTTGTTGCAGATGATGTTGAGGAGCCCTTAATAACTATGGACACGCCTGAAGAGGATGGGTCATCTGCGAAATATGTGGAGAACATAATTATTCCCTCTGCTCTGGTTGGAAAAAGTTTTGGTCAAAAATTAAAGGATGCCATAAGTGAAGGGGACATGGTCAATGTTAACCTTGATTGGAGAGAGGCTGTCCCTCACCCAGATGATCGCGTGGAGTATGAGTTGTGGAGCAACAGCAATGATGAGTGTGGAGTTAAGTGTGATATGCTCATCGAATTTCTTAAGGATTTCAAGGGTGCAGCTCAGATACTAGAGAAAGGCGGTTACACTCTCTTTACACCCCATTATATTACCTGGTACTGTCCCCATGCATTCACTTTGAGCAAACAGTGCAAGTCTCAATGCATTAATCACGGAAGATATTGCGCTCCCGATCCTGACCAAGACTTCTCCGCAGGTTATGATGGCAAAGATGTCGTTATTGAAAACTTAAGACAGCTTTGTGTTTTCAAGGTGGCTAATCAAACTCTTAAGCCTTCTGTCTGGTGGGACTATGTCACTGATTTTCAAATTAGATGCCCCATGAAGGATAACAAGTACAATAAGGAATGCGCTAATTCTGTCATTAAATCACTGGGTCTTGATATTGAAAAGATTGAAAAGTGCATGGGAGACCCAGATGCCGATACTGATAATCCTGTTTTGAAACAAGAGCAAGATGCCCAAATTGGAAAGGGATCACGAGGTGATGTTACCATATTGCCTACTCTTGTGGTCAATAATCGACAATATCGAGGTTTCTACTCTATGCTCTTGTATAGGTTGTCATCTGGATTTCCAATTCTAAACAGAATATTTCCAGGAAAATTGGAGAAAGGTGCTGTTCTAAAGGCTATATGTTCTGGGTTTGAGGAAACTACTGAACCAGCTGTTTGCTTGAGCACTGATGTGGAGACAAATGAGTGCTTGACAAACAATGGTGGTTGTTGGCAGGATAAATCAGCTAACATCACTGCATGCAAGGATACATTCCGGGGGAGAGTATGTGAATGCCCTCTGGTTGATGGTGTACAATTCAAAGGAGATGGTTATACAACTTGTGAAGCAAGTGGACTTGGGCGTTGCAAGATAAACAATGGAGGCTGTTGGCATGATGCCCGGAATGGACATGCATTTTCTGCTTGTTTGGATAATGGAGGGGTCAAATGCCAGTGTCCCACAGGGTTTAAAGGTGATGGTGTTAAAAATTGTGAAGATATTGATGAATGCAAAGAGAAGAAGGCTTGTCAGTGCCCTGAATGTAGCTGCAAGAATACATGGGGAAGCTATGACTGCAGTTGTAGTGGAGATCTTCTGTATATGAGGGACCACGATACCTGCATAAGTAAAACTGGCAGTCAGGGAAGATCTACTTGGACTGCTTTTTGGTTGATTTTACTTGGCATAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTATAGAATAAGGCAATACATGGATTCTGAAATCAGAGCAATCATGGCACAATATATGCCCTTGGACAGCCAAGCAGAAGTTCCAAATCATGTCAATGATCAAAGAGCATGA 1941 0.4348 MKVVWRWLFVVVVLPVSVMGRFVVEKNSLRVTSPDKIRGTHDSAIGNFGIPQYGGSMAGNVVYPKDNKKACKDFDDFGISFKSTPGALPTIVLLDRGSCFFALKVWNAQKAGASAVLVADDVEEPLITMDTPEEDGSSAKYVENIIIPSALVGKSFGQKLKDAISEGDMVNVNLDWREAVPHPDDRVEYELWSNSNDECGVKCDMLIEFLKDFKGAAQILEKGGYTLFTPHYITWYCPHAFTLSKQCKSQCINHGRYCAPDPDQDFSAGYDGKDVVIENLRQLCVFKVANQTLKPSVWWDYVTDFQIRCPMKDNKYNKECANSVIKSLGLDIEKIEKCMGDPDADTDNPVLKQEQDAQIGKGSRGDVTILPTLVVNNRQYRGFYSMLLYRLSSGFPILNRIFPGKLEKGAVLKAICSGFEETTEPAVCLSTDVETNECLTNNGGCWQDKSANITACKDTFRGRVCECPLVDGVQFKGDGYTTCEASGLGRCKINNGGCWHDARNGHAFSACLDNGGVKCQCPTGFKGDGVKNCEDIDECKEKKACQCPECSCKNTWGSYDCSCSGDLLYMRDHDTCISKTGSQGRSTWTAFWLILLGIVMIAGGAFLVYKYRIRQYMDSEIRAIMAQYMPLDSQAEVPNHVNDQRA 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1949 646 ProSitePatterns EGF-like domain signature 2. 519 533 IPR000742 -
Aed11g1949 646 SMART egfca_6 535 577 IPR001881 GO:0005509
Aed11g1949 646 Gene3D - 19 183 - -
Aed11g1949 646 Gene3D Laminin 540 577 - -
Aed11g1949 646 ProSitePatterns Calcium-binding EGF-like domain signature. 535 561 IPR018097 GO:0005509
Aed11g1949 646 Pfam PA domain 58 160 IPR003137 -
Aed11g1949 646 Gene3D Laminin 489 539 - -
Aed11g1949 646 CDD EGF_CA 535 563 - -
Aed11g1949 646 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 10 625 - -
Aed11g1949 646 PANTHER VACUOLAR-SORTING RECEPTOR-LIKE PROTEIN 10 625 - -
Aed11g1949 646 Pfam Complement Clr-like EGF-like 518 538 IPR026823 -
Aed11g1949 646 SUPERFAMILY PA domain 46 126 IPR046450 -
Aed11g1949 646 CDD PA_VSR 47 174 - -
Aed11g1949 646 Gene3D Laminin 428 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1949 Aed-Chr11 22228268 22232559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1949 20 646 Miscellaneous Gene Families AT2G14740 81.180 0.0 1081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1949 - - gmx:100777949 1228.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1949 11 22228268 22232559 Aed11g1949 11 22228268 22232559 ECH
Aed11g1949 11 22228268 22232559 Aed1g2016 1 17003169 17008076 PCT