Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1479 ATGAAGAAGCAGTGTTGTGATGAAGAGTTAGAGACAAATGTTGGATCCTCATGGGAATGTTGGTTCGACGATGCATGCATCGTTGACATGGATTACTTTGTGAAGACCCTTTCAAGCATAAAACAGAAAGGTGTTGGTGCAGATTTGATTGGCTCCATCATCACTCATTACGCCTCCATATGGCTCCCTGACCTCTCTTCCTCTGCTGAAAATGGTGTCAGCACTACTCATTTCCAATCCCCGGAAAGCGTAACGAATTCATGGATGAAGAAGAGGTTCTTTGTGGAGACCCTGGTGAGTGTTCTGCCTCCTGAGAAGGATTCTGTCCCATGCAATTTCCTCCTTCGCCTTCTGAGGACGGCCAACATGGTTCGTGTTGACGCCACTTATAGAGCTGAGCTTGAGAACCGAATTTCGTGGCAGCTAGACCAGGCTTCTCTGAAAGAGCTGATGATACCCTCCTTCAGCCACACTTGTGGGACTCTTTTGGATGTTGAGCTTGTCCTCAGGTTGGTTAAGAGGTTTATGAGTTTGGACCGTGATATTGGTGCTGCTTTGGTTAAGGTGGCCAAGTTGGTTGATTGCTACCTCGCTGAAGCTGCTCTGGATGCCGATTTCACCTTGTCGGACTTCATTGCACTTGCTGCTGCCCTTCCAAGCCATGCAAGAGCCACCGATGATGGCTTGTACCGAGCCATTGACACTTATCTCAAGGCACATCCAGGTGTGTCAAAGGAAGAAAGGAAGGGGGTGTGTAGGGTGCTTGATAGCCGGAAACTGACAGCAGAGGCATCACTTCATGCAGCTCAGAATGAACGGTTGCCTGTGAGAGCTGTGATTCAGGTTCTCTTCTCTGAACAAACCAAACTCAACCGCAACAACATTGATTGGAGTTGGAGTGGCTCCTTCAGGAGTCCCATTGGAGCAGCACCAGGACGATGCCTTTCAAAGCGTGAAATGAATGCTCAGCAAATGGAGATAAAGAAGCTGAAGGAAGATGTTTACAGGCTGCAAAGCCAGTTGAATGCCATGCAAGTGCAGATGGAGAGGATGGCCGCAAAGAAGAAGAGCTTATTCAAATGGAGGAAGTTTGGAATGCTGCCTGCGTTTGGTAGAAATGTGGGAGAGGTGGAGAAAATCCAAGAAGAAGAAGAAGAAGAAGAAGAGGCTCAAAGTGAAGAAGTTGGATTTGGAAGGCAAACGCCTATGGACATGAAAACCAGTCTGGTCAAAAGGACTCCCCACAACTGGAGGAAATCCAAGTCCTGA 1269 0.4791 MKKQCCDEELETNVGSSWECWFDDACIVDMDYFVKTLSSIKQKGVGADLIGSIITHYASIWLPDLSSSAENGVSTTHFQSPESVTNSWMKKRFFVETLVSVLPPEKDSVPCNFLLRLLRTANMVRVDATYRAELENRISWQLDQASLKELMIPSFSHTCGTLLDVELVLRLVKRFMSLDRDIGAALVKVAKLVDCYLAEAALDADFTLSDFIALAAALPSHARATDDGLYRAIDTYLKAHPGVSKEERKGVCRVLDSRKLTAEASLHAAQNERLPVRAVIQVLFSEQTKLNRNNIDWSWSGSFRSPIGAAPGRCLSKREMNAQQMEIKKLKEDVYRLQSQLNAMQVQMERMAAKKKSLFKWRKFGMLPAFGRNVGEVEKIQEEEEEEEEAQSEEVGFGRQTPMDMKTSLVKRTPHNWRKSKS 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1479 422 ProSiteProfiles NPH3 domain profile. 19 289 IPR027356 -
Aed1g1479 422 Coils Coil 320 347 - -
Aed1g1479 422 Coils Coil 373 393 - -
Aed1g1479 422 PANTHER OS12G0117600 PROTEIN 17 422 IPR043454 -
Aed1g1479 422 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 17 422 - -
Aed1g1479 422 MobiDBLite consensus disorder prediction 379 422 - -
Aed1g1479 422 Pfam NPH3 family 20 265 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1479 Aed-Chr1 13387634 13390006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1479 15 290 EF-hand Containing Proteins AT3G44820 35.082 6.54e-47 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1479 - - gmx:100777820 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1479 1 13387634 13390006 Aed1g1479 1 13387634 13390006 ECH
Aed1g1479 1 13387634 13390006 Aed2g0154 2 1049028 1051397 PCT