Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1397 ATGACGAGGCTCCTTAGAACTATCTTCATTGCCCAAAAGCTGAACCCCAAATGCATTTTCCCACCTCTCCTTTCCCGCTACTATTACTCCTCCGAAGCCAACGAACCTCAGAAACCGGCAAAGGAAACCACCAGCAGCTGGAGCGTGTACGGAAACGTCTACGATCGCCCAGTTGCGCAGCGCGACCAAAGCGATCACAGCGACGGAGACGAAAACCCTAGCAGCCGCGGGAGAGCAGCAACAAAGAGTGTAGCAGCAGTGACGAAGTCAAAGGGAAAGGGGAAGGTGAAAACCCAGTGGGTGTGCTCCGATTGCGGCCACACCACAGGGCAATGGTATGGACAATGCCCCGAATGCGAAATGCATGGCACTATGAACGAGTTTCATGAGAGCAAATCAACTGACACCAAGTCCAGTGGTGGCTTAGCATTTTCCGATGATGCAGTGGGCTCGTGGCTCCCACTACGCCCCGAAGACCTGCGCCCCCTCAAATTGGAAGAGGTCAACCGTGCCTTCAATTCCCACCACTCGAGAATACCTTTTTCTGGTTCTTTTGGAAATGAAGTTTCTACTGTGCTTGGTGGAGGTCTTGTACCAGGTTCTTTAACTTTAGTTGGTGGTGATCCTGGTATTGGGAAAAGTACATTGCTGTTGCAGATTTCAGCGATGATAGCAAAAGAATGCAGTGATGATAAAGGACCTCCAGTTAGCCTTCTGCAAATTGGTATTAGAGCAGATCGCCTTGGGATTAAGTCCAATATTTATTTATATTCAAGCACTGATATAGAGGTGAAGGAGTGTACTGCAGCTTTGATGCGATTTGCAAAAACAACTAACATCTCAGTTTTTTTGATTGGACATGTGACCAAATCTGGAGAGATAGCGGGACCTCGTGTCTTGGAGCATATTGTTGATGTTGTGTTGTATATGGAAGGTGAGAAGTACTCTCCATATCGAATGCTTCGAGCTGTGAAAAATCGGTTTGGATCCATCGATGAGCTTGCAGTTCTTGAGATGTCACAGTCAGGACTCCAGGCTGTTAAAAATGCCAGTGAAATGTTTCTCTCTAAACAACACTCCGATTCAAATGTTTTAGCTGGACTGGCTATTGCTGTAATAATGGATGGTACAAGAACTTTTTTAATTGAAATTCAGGCACTTTGCCTTACACATTGCCCAGTTTCAAGTTCACTATCTAATGGGATCAATGCAAACAAAGCTAATATTATTAAATGTGTACTTATAAAGCAAGCAGGCCTCCATCTTCAAGATAATGCCGTGTTTTTGAATGTTGTTAGTGGATTGACAGTGACAGAGACTGCTGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGTTTCTTGGAGTTCCCAATTCCAGAGGGGACTGCATTCATTGGTGAAATTGGCCTTGGTGGAGAGCTTCGCATGGTTCCTAGAATTGATAAAAGGGTCAACACATTGGTGAAGTTGGGTTACAGAATGTGTGTAGTACCAAAGCAAGCTGAAAAACTTTTAGAAACCGAAGGTCTAGGAAAGATGAAAGTTGTAGGTTGCAATGATCTGAAAGAGGTTATTGATGCTGTATTCAGTAGAGATAATTAA 1605 0.4467 MTRLLRTIFIAQKLNPKCIFPPLLSRYYYSSEANEPQKPAKETTSSWSVYGNVYDRPVAQRDQSDHSDGDENPSSRGRAATKSVAAVTKSKGKGKVKTQWVCSDCGHTTGQWYGQCPECEMHGTMNEFHESKSTDTKSSGGLAFSDDAVGSWLPLRPEDLRPLKLEEVNRAFNSHHSRIPFSGSFGNEVSTVLGGGLVPGSLTLVGGDPGIGKSTLLLQISAMIAKECSDDKGPPVSLLQIGIRADRLGIKSNIYLYSSTDIEVKECTAALMRFAKTTNISVFLIGHVTKSGEIAGPRVLEHIVDVVLYMEGEKYSPYRMLRAVKNRFGSIDELAVLEMSQSGLQAVKNASEMFLSKQHSDSNVLAGLAIAVIMDGTRTFLIEIQALCLTHCPVSSSLSNGINANKANIIKCVLIKQAGLHLQDNAVFLNVVSGLTVTETAGDLAIAAAICSSFLEFPIPEGTAFIGEIGLGGELRMVPRIDKRVNTLVKLGYRMCVVPKQAEKLLETEGLGKMKVVGCNDLKEVIDAVFSRDN 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1397 534 PANTHER DNA REPAIR PROTEIN RADA 3 263 - -
Aed1g1397 534 PANTHER DNA REPAIR PROTEIN RADA 263 534 - -
Aed1g1397 534 Gene3D - 245 352 IPR027417 -
Aed1g1397 534 Pfam Subunit ChlI of Mg-chelatase 415 501 - -
Aed1g1397 534 PANTHER DNA REPAIR-LIKE PROTEINRADA 3 263 - -
Aed1g1397 534 MobiDBLite consensus disorder prediction 59 75 - -
Aed1g1397 534 Pfam Rubredoxin metal binding domain 100 127 IPR041166 -
Aed1g1397 534 MobiDBLite consensus disorder prediction 58 88 - -
Aed1g1397 534 SUPERFAMILY Ribosomal protein S5 domain 2-like 325 531 IPR020568 -
Aed1g1397 534 Gene3D - 165 244 IPR027417 -
Aed1g1397 534 PRINTS DNA repair protein radA signature 394 417 - -
Aed1g1397 534 PRINTS DNA repair protein radA signature 283 311 - -
Aed1g1397 534 PRINTS DNA repair protein radA signature 102 126 - -
Aed1g1397 534 PRINTS DNA repair protein radA signature 318 344 - -
Aed1g1397 534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 358 IPR027417 -
Aed1g1397 534 Gene3D - 362 534 IPR014721 -
Aed1g1397 534 PANTHER DNA REPAIR-LIKE PROTEINRADA 263 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1397 Aed-Chr1 12855391 12862991 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1397 K04485 - gmx:100791181 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1397 1 12855391 12862991 Aed1g1397 1 12855391 12862991 ECH
Aed1g1397 1 12855391 12862991 Aed2g0244 2 1621952 1627841 PCT