Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1388 ATGGGTTTTTTCTTCAAATGGGTCAACTTGTTTGTCCTCTTGTTTCATTTCCTTACCGCAACACCCATATTCTCAAATGCTATCGCCACCACCAAGTTCCTAGATTTAGCCAAGGATCCTCGAGTTTTTGATTGGATGGTTGGTATCAGAAGGAAAATTCACGAGAATCCAGAACTGGGTTATGAGGAATTTGAGACCAGTAAGCTTATAAGAGCGGAATTGGATAAACTGGGCATCTCATATAAACACCCAGTTGCAGTCACTGGTGTTGTTGGCTTCATCGGGACTGGACTCTCTCCTTTTGTTGCATTAAGAGCTGACATGGATGCGCTTCCTATGCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTACCTGGAAAGATGCATGCATGCGGTCATGATGCTCATGTTGCCATGCTTCTCGGTGCTGCAAAGATACTCAAAGAGCATGAAAATGAGATACGAGGAACTGTTGTTCTTGTTTTTCAACCAGCAGAAGAAGGAGGTGGAGGGGCTAAGAAAATTTTAGATGCTGGAGTCTTGGAAAATATCTCTGCCATATTCGGAATGCATATTGCACCTACTTATCATATAGGTGAAGTGGCCTCTAGGTCAGGTCCCATATTTGCAGGAAGCGGCTTCTTTGAAGCAACAATAAATGGCAGGGGAGGCCATGCAGCTATTCCTCAGCACTCTATAGACCCAATATTGGCAGCTTCCAATGTGATTGTTAGCTTACAGCATATTGTTTCTCGTGAGGCTGATCCTCTGGACTCCCAGGTTGTGACTGTAGCAAAATTTCAAGGAGGTGGTGCTTTCAATGTTATTCCAGACTCTGTCACCATTGGTGGCACCTTCCGAGCTTTTTCAAAAGAAAGCTTCATGCAATTGAGACAGCGGATTGAGCAGGGTCATGGTGGAGACACAGACCCTGTGTATGACAAAATTTGTTTGGCCATTTGCAAGGTTATCACTGGGCAAGCTGCTGTGCAGAGATGCAATGCAACAGTCAACTTTCTTGACGACGAAAAACCATTCTTCCCCCCTACAGTAAACAATGGTGACTTGCATGAGTACTACAAAAGTGTTGCTGGGAGTTTGCTTGGGGTGAATAGTGTTAAGGAGATGCAACCACTGATGGGATCTGAGGACTTTGCATTCTATCAAGAGGTTTTTCCGGGATACTTCTTCCTCCTTGGAATTGAGAATGCCTCTGAACGTCTTGAATTACCACACTCTCCATATTTCAAAATCAATGAAGATGCACTTCCTTATGGAGCTGCACTTCATGCATCATTAGCTAGTGGTTATCTTCTCAAATTAAATCAGGACATACCAGTAGTGGAGGGGAAACATCGGGATGAATTATAA 1374 0.4389 MGFFFKWVNLFVLLFHFLTATPIFSNAIATTKFLDLAKDPRVFDWMVGIRRKIHENPELGYEEFETSKLIRAELDKLGISYKHPVAVTGVVGFIGTGLSPFVALRADMDALPMQEMVEWEHKSKVPGKMHACGHDAHVAMLLGAAKILKEHENEIRGTVVLVFQPAEEGGGGAKKILDAGVLENISAIFGMHIAPTYHIGEVASRSGPIFAGSGFFEATINGRGGHAAIPQHSIDPILAASNVIVSLQHIVSREADPLDSQVVTVAKFQGGGAFNVIPDSVTIGGTFRAFSKESFMQLRQRIEQGHGGDTDPVYDKICLAICKVITGQAAVQRCNATVNFLDDEKPFFPPTVNNGDLHEYYKSVAGSLLGVNSVKEMQPLMGSEDFAFYQEVFPGYFFLLGIENASERLELPHSPYFKINEDALPYGAALHASLASGYLLKLNQDIPVVEGKHRDEL 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1388 457 Gene3D - 211 349 - -
Aed1g1388 457 PANTHER PEPTIDASE M20 FAMILY MEMBER 3 457 IPR017439 GO:0016787
Aed1g1388 457 CDD M20_IAA_Hyd 46 439 IPR044757 GO:0009850|GO:0016787
Aed1g1388 457 PANTHER AUXIN CONJUGATE HYDROLASE 3 457 - -
Aed1g1388 457 PIRSF Amidohydrol_AmhX 32 308 IPR017439 GO:0016787
Aed1g1388 457 PIRSF Amidohydrol_AmhX 309 443 IPR017439 GO:0016787
Aed1g1388 457 Pfam Peptidase dimerisation domain 212 304 IPR011650 -
Aed1g1388 457 SUPERFAMILY Zn-dependent exopeptidases 42 439 - -
Aed1g1388 457 Pfam Peptidase family M20/M25/M40 103 435 IPR002933 GO:0016787
Aed1g1388 457 Gene3D Zn peptidases 46 432 - -
Aed1g1388 457 SUPERFAMILY Bacterial exopeptidase dimerisation domain 212 304 IPR036264 -
Aed1g1388 457 TIGRFAM amidohydrolases: amidohydrolase 46 426 IPR017439 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1388 Aed-Chr1 12778959 12787711 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1388 K21604 - gmx:100794121 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1388 1 12778959 12787711 Aed1g1388 1 12778959 12787711 ECH
Aed1g1388 1 12778959 12787711 Aed2g0262 2 1707393 1710604 PCT