Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1381 ATGAATGGTGGCGATGAGGTCGTGGCAGCTCCGGCGGGTCCACCGCACCCTCTGGAGTGGAAATTCTCGCAGGTCTTCGGGGAACGCACGGCAGGAGAAGAGGTTCAGGAAGTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGGGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATGCAAAAGATCATGGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTAGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCATGAGCCTGAGTTTGACTATCTTAAGAGTTTGGAGATTGAAGAGAAAATCAACAAAATCAGATGGTGCCAAACAGCTAATGGTGCCGTCTTCCTTCTTTCTACAAACGATAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATTTCTGAGATGAATGTTGACCCTTCAAAATCAATGGGGAATGGATCTATTGCCAGTTCAAGCAATTCAAGTAGTTCTAGGCCATATCTTGCAAATGGAGGATCTCCAGATAGATACAATTATATAGGCAATGACTTTTCATTTCCATCAGGAGGCATACCATCACTAAAATTACCCATGGTAGTTGTAAGTAGCCATGAAACCAGCTTAGTTGCTCGATGTCGTAGAGTGTATGCACATGCTCATGATTATCATATCAATTCTATTTCAAATAACAGCGATGGTGAAACTTTCATATCAGCCGATGATTTGCGAATAAATCTTTGGAACCTGGAAATTAGCAATCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGAGGTTATAACATCTGCAGAATTTCACCCCACACATTGTAATACGTTGGCATATAGCAGTTCAAAGGGTTCAATCCGTCTTGTTGACTTGCGACAATCAGCATTATGCGATTCTCATGCCAAACTATTTGAGGAACAGGAAGCCCCAGGGTCCAGATCATTTTTCACAGAGATTATTGCTTCTATCTCAGACATAAAATTTGGGAAGGGTGGAAGATACATACTTAGTCGTGATTACATGACTTTAAAGTTGTGGGACATTAATATGGATTCAGGCCCCGTTGCAACTTTCCAGGTTCATGAGTATTTAAGACCCAAGCTTTGTGATTTATATGAAAATGATTCAATTTTCGATAAGTTTGAGTGTTGTCTGAGTGGTGACGGATTGCGCGTAGCAACTGGTTCCTACAGCAATCTATTTCGTGTGTTTGGTTGTGCCCCTGGAAGTGCTGAGGCTACAACTCTAGAAGCCAGTAAAAATCCAATGAGACGACAAGTTCAAACACCTTCAAGGCCTTCTAGATCACTGGGAAATAGTATAACACGTGTTGTAAGACGGGGAGCAGAAACCCCTGGGGTGGATGCTAATGGGAATTCATTTGATTTCACAACAAAGTTGCTGCACTTAGCATGGCATCCAAGTGAGAATTCAATTGCTTGTGCTGCTGCAAATAGCTTGTACATGTACTATGCGTAA 1551 0.4159 MNGGDEVVAAPAGPPHPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDAKDHGGSRRDLERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGAVFLLSTNDKTIKFWKVQEKKVKKISEMNVDPSKSMGNGSIASSSNSSSSRPYLANGGSPDRYNYIGNDFSFPSGGIPSLKLPMVVVSSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKGGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSAEATTLEASKNPMRRQVQTPSRPSRSLGNSITRVVRRGAETPGVDANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1381 516 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Aed1g1381 516 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 516 - -
Aed1g1381 516 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 516 IPR000009 GO:0000159|GO:0019888
Aed1g1381 516 SUPERFAMILY WD40 repeat-like 39 508 IPR036322 GO:0005515
Aed1g1381 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Aed1g1381 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 348 375 IPR000009 GO:0000159|GO:0019888
Aed1g1381 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Aed1g1381 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 235 262 IPR000009 GO:0000159|GO:0019888
Aed1g1381 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 402 428 IPR000009 GO:0000159|GO:0019888
Aed1g1381 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 485 514 IPR000009 GO:0000159|GO:0019888
Aed1g1381 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 291 319 IPR000009 GO:0000159|GO:0019888
Aed1g1381 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 376 401 IPR000009 GO:0000159|GO:0019888
Aed1g1381 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Aed1g1381 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 263 290 IPR000009 GO:0000159|GO:0019888
Aed1g1381 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 320 347 IPR000009 GO:0000159|GO:0019888
Aed1g1381 516 Pfam WD domain, G-beta repeat 227 263 IPR001680 GO:0005515
Aed1g1381 516 SMART WD40_4 274 314 IPR001680 GO:0005515
Aed1g1381 516 SMART WD40_4 224 263 IPR001680 GO:0005515
Aed1g1381 516 SMART WD40_4 31 66 IPR001680 GO:0005515
Aed1g1381 516 SMART WD40_4 105 145 IPR001680 GO:0005515
Aed1g1381 516 SMART WD40_4 375 429 IPR001680 GO:0005515
Aed1g1381 516 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 233 247 IPR018067 -
Aed1g1381 516 Gene3D - 34 195 IPR015943 GO:0005515
Aed1g1381 516 Gene3D - 210 513 IPR015943 GO:0005515
Aed1g1381 516 PIRSF PPA2_B55 12 516 IPR000009 GO:0000159|GO:0019888
Aed1g1381 516 MobiDBLite consensus disorder prediction 157 183 - -
Aed1g1381 516 MobiDBLite consensus disorder prediction 160 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1381 Aed-Chr1 12752815 12759161 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1381 K04354 - gmx:100799449 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g0281 2 1825808 1834133 Aed1g1381 1 12752815 12759161 ECH
Aed1g1381 1 12752815 12759161 Aed1g1381 1 12752815 12759161 ECH
Aed1g1381 1 12752815 12759161 Aed2g0281 2 1825808 1834133 PCT