Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1370 ATGAAGGTGATTGATCACATAGCTCCACGAAATCTAGATTTGGAATCGGGAAATTTCCGACACAAATCTGCTGGGTTGTTGACAAACATTGAAATGAGGAAAGTGAGGTGGTATTATTTTGAGGGGAACTATGATCTAGTGAAGTTCATAAAGCTGGTGCAGCAGGCAGGCCTTTATGTTAATCTCAGGATTGGTCCTTATGTCTGTGCTGAGTGGAACTTCGGGGGTTTCCCTGTTTGGCTAAAGTACATTCCAGGAATCAGCTTCAGAACAGACAATGAACCATTTAAGAATCAAATGCAAATATTTACCACGAAGATTGTTGATTTGATGAAAGCGGAGAGGTTATATGAATCTCAGGGAGGTCCAATAATTATGTCCCAGATTAACACTTGCAATGGCTTCTATTGTGATTATTTCTCTCCAAATAAGGCTTACAAGCCAAAGATGTGGACAGAAGCATGGACTGGCTGTCCTGTGAATAATGAATATGGTTGGTACATTTCTATGAATTGCTTCTTGTTGATGTGTGGAAATGAAAATCTGATGCATGTAATTGGCACTTGTGCTTGTCCCATGTCTATTGGATTGCTCAGGCAACCAAAGTGGGGTCATCTGAAGGATTTACACAGAGCAATAAAACTCTGTGAACCAGCTTTAGTATCTGGAAATCCTACTGTTGGTTCTCAGAGTGCTCAGATGAAGATGACTCATGTTCCTATTCATGACGGACTCTCTTGGCAATCATTCAATGAAGAAACGACCACTACTGATGATAGTTCCTTCACCATGACTGGCCTGTTGGAGCAGTTAAACACCACAAGAGATTTAACTGACTACTTGTGGTACTCCACAGATGTTGTGCTTGATCCCAATGAAGGATTTCTGAGAAACGGAAAGGATCCTGTTCTTACTGTGTTTTCCGCTGGGCATGCTTTGCATGTTTTTATAAATGGTCAGCTATCAGGAACTGCATATGGAAGCTTAGAATTCCCTAAACTGTCATTTAACGAGGGAGTGAAGCTCAGAGCCGGTGTTAACAAGATCTCTCTTCTAAGTGTTGCAGTTGGACTCCCGGTTTGCTCTCTCTCCCTCTCTATCACACACACACACACACACACACATATCAAATAG 1134 0.4162 MKVIDHIAPRNLDLESGNFRHKSAGLLTNIEMRKVRWYYFEGNYDLVKFIKLVQQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNEPFKNQMQIFTTKIVDLMKAERLYESQGGPIIMSQINTCNGFYCDYFSPNKAYKPKMWTEAWTGCPVNNEYGWYISMNCFLLMCGNENLMHVIGTCACPMSIGLLRQPKWGHLKDLHRAIKLCEPALVSGNPTVGSQSAQMKMTHVPIHDGLSWQSFNEETTTTDDSSFTMTGLLEQLNTTRDLTDYLWYSTDVVLDPNEGFLRNGKDPVLTVFSAGHALHVFINGQLSGTAYGSLEFPKLSFNEGVKLRAGVNKISLLSVAVGLPVCSLSLSITHTHTHTHIK 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1370 377 SUPERFAMILY (Trans)glycosidases 36 217 IPR017853 -
Aed1g1370 377 PANTHER BETA-GALACTOSIDASE RELATED 37 130 IPR001944 GO:0004553|GO:0005975
Aed1g1370 377 PANTHER BETA-GALACTOSIDASE RELATED 195 227 IPR001944 GO:0004553|GO:0005975
Aed1g1370 377 PANTHER BETA-GALACTOSIDASE RELATED 227 360 IPR001944 GO:0004553|GO:0005975
Aed1g1370 377 PANTHER BETA-GALACTOSIDASE RELATED 129 158 IPR001944 GO:0004553|GO:0005975
Aed1g1370 377 PRINTS Glycosyl hydrolase family 35 signature 62 81 IPR001944 GO:0004553|GO:0005975
Aed1g1370 377 PRINTS Glycosyl hydrolase family 35 signature 119 134 IPR001944 GO:0004553|GO:0005975
Aed1g1370 377 PANTHER BETA-GALACTOSIDASE 37 130 - -
Aed1g1370 377 PANTHER BETA-GALACTOSIDASE 227 360 - -
Aed1g1370 377 PANTHER BETA-GALACTOSIDASE 129 158 - -
Aed1g1370 377 SUPERFAMILY Galactose-binding domain-like 232 352 IPR008979 -
Aed1g1370 377 Pfam Glycosyl hydrolases family 35 36 134 IPR031330 -
Aed1g1370 377 PANTHER BETA-GALACTOSIDASE 195 227 - -
Aed1g1370 377 Gene3D Glycosidases 30 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1370 Aed-Chr1 12678498 12688558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1370 38 359 Glycoside Hydrolase AT4G36360 37.931 1.17e-90 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1370 - - csin:114273146 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1370 1 12678498 12688558 Aed2g0298 2 1953031 1959223 PCT