Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1367 ATGCAAATGGCGAACGATGATAAATGCTGTTCCACACAACTTCTTGAAGGAGATGGTACATTCAATGTTGCCGGGATTGAAAACTTCATGAAAGAAGTTAAACTAGGTGAATACGGGCTTTCCTACGCCGTTGTTTCTATTATGGGTCCACAAAGTAGTGGCAAGAGCACGTTGTTAAATAGTTTGTTTCGTACTAACTTCACAGAGATGGATGCGTCTCAAACAACCAGAGGAATTTGGATGGCTAGATGTGTTGGCATAGAACCTTGTACGCTTGTCATGGATTTGGAGGGTACAGATGGAAGAGAACGTGGAGAGGATGATACTGCATTTGAAAAGCAGAGTGCTTTATTTGCTTTGGCTATTTCTGATATAGTGCTAATAAACATGTGGTGCCATGACATTGGTCGCGAACAAGCTGCAAATAAGCCACTTCTCAAAACTGTGTTTCAGGTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGACAAGACAAAGACACCGCTTGAAAATTTAGAGCCTGTTTTGAGAGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCAGAGGTCCATAAGGAAACCCCTTTAAGTGATTTTTTCATTGTTGAAGTTGTTGCTCTTTCTAGTTTCGAAGAAAAGGAAGAACAATTTAAGGAGCAGGTTGCCAACTTGAGGCAACGATTCCATCATTCTATCGCCCCGGGCGGGCTTGCAGGGGATCGGCGTGGAGTAGTTCCTGCTTCAGGCTTTTCATTTAGTGCTCAGGAAATTTGGAAAATCATTAAGGAGAACAAGGATCTCGACCTTCCTGCACACAAGGTTATGGTTGCCACTGTACGATGTGAAGAAATTGCTAATGAGAAATATGGCCTTTTTGCTACAAATAAGGAATGGTATCAGTTGGAAGAGGGTGTGAAATCAGGCCATATTTATGAATTTGGGAAAAAGCTCAATTCACTCCTTACCGCTTGTCTTTCAGAGTATGATGCTGAAGCCAACTATTTTGACGAAGGTGTGAGAACTGCAAAACAAAAGCAACTTCAAGAAAAACTGTTTCAACTTGTCCAACCAACATTCCAAATTGCGCTGGGACGTGTAAGGTCCGAAGCTTTGGATAAGTTCAAGGACGCATTTGACAAGGCTTTGAATGGAGGGGATGGTTTTTCTTCTGCTGCTAATAAGTGCATAGAGTCTTATATGGCTCAGTTTGATGAAGGATGTGCAGATGTTGTTATTGAAATAGCAAACTGGGATACATCTAAAGTGAGAGAGAAGCTACGGCGTGATATTGATGCACACGTCGCATCTGTACGTGCAGCTAAGATGTCAGAACTTGTTTCATCATATGAGGAAAAACTGAAGGAGACCTTGTCTGGACCTATTGAAACTCTATTGGATGGAGCTAATAGTGAAACTTGGCCATCAATAAGGAAACTTCTTGTTCGTGAGACTCAATCAGCTGTTTCTGGGTTCTCTGTCGAACTTATCAGATTTGATATGGATGAACAAACTCAAAAGAACATGATTGTGACTTTAGAGGATTACGCAAAGAGTGTAGTAGAAGCCAAGGCTAGGGAAGAAGCTGGCAGAGTTCTAATCCATATGAAGGACAGTCATGATTCTGATTCAATGCCTCGTGTTTGGACGGGAAAAGAAGATATTCGAGCCATCACCAAGTCTGCCCGCTCTGCATGTTTGAAGTTGCTGTCTGTATTGGCTGTAACTCGCTTGGATAATGATGATGACATTTATGATATCGAGAAAACATTGACAGTTGCATTGGCTGAATCATTAAGCAGTTCTGCTAAAGATAAAAGCATCACGGTAGCTGACCCACTGGCTTCAAGCACTTGGGATCAGGAAGCCAACAATCGTAGCAGCAACTGGTTACCTCCACCATGGGCGATTGTTGCTTTGCTTATTCTTGGATTTAATGAATTTATGACACTTTTAAGAAATCCCTTGTATTTAGGTGTCATCTTCGTGGGCTATCTTCTCGTTAAAGCCCTATGGACCCAGCTTGACATTACGGGTGAATTTCGCAATGGAGCTCTTCCAGGAATGATATCCTTGTCTAGCAAGTTTGTTCCAACTATCATAAACCTTATAAAAAAGCTAGCAGAGGAGGGACAGAACCCTGCACCTACCCCCAATCCTCGGACTAGAAATCCATCAAAAAGAAGGTCGTCAAGGAGCAGTGATACGTCATCTAGTGCTTCATCTGCCGTAACTTCATCCGGCAATGTGGCCGAGTATACTACCAATCCATCCAAATCTGAGTAG 2310 0.4212 MQMANDDKCCSTQLLEGDGTFNVAGIENFMKEVKLGEYGLSYAVVSIMGPQSSGKSTLLNSLFRTNFTEMDASQTTRGIWMARCVGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAISDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTKTPLENLEPVLREDIQKIWDSVPKPEVHKETPLSDFFIVEVVALSSFEEKEEQFKEQVANLRQRFHHSIAPGGLAGDRRGVVPASGFSFSAQEIWKIIKENKDLDLPAHKVMVATVRCEEIANEKYGLFATNKEWYQLEEGVKSGHIYEFGKKLNSLLTACLSEYDAEANYFDEGVRTAKQKQLQEKLFQLVQPTFQIALGRVRSEALDKFKDAFDKALNGGDGFSSAANKCIESYMAQFDEGCADVVIEIANWDTSKVREKLRRDIDAHVASVRAAKMSELVSSYEEKLKETLSGPIETLLDGANSETWPSIRKLLVRETQSAVSGFSVELIRFDMDEQTQKNMIVTLEDYAKSVVEAKAREEAGRVLIHMKDSHDSDSMPRVWTGKEDIRAITKSARSACLKLLSVLAVTRLDNDDDIYDIEKTLTVALAESLSSSAKDKSITVADPLASSTWDQEANNRSSNWLPPPWAIVALLILGFNEFMTLLRNPLYLGVIFVGYLLVKALWTQLDITGEFRNGALPGMISLSSKFVPTIINLIKKLAEEGQNPAPTPNPRTRNPSKRRSSRSSDTSSSASSAVTSSGNVAEYTTNPSKSE 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1367 769 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 39 250 IPR030386 GO:0005525
Aed1g1367 769 Coils Coil 216 236 - -
Aed1g1367 769 Gene3D - 20 248 IPR027417 -
Aed1g1367 769 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 48 279 - -
Aed1g1367 769 MobiDBLite consensus disorder prediction 739 769 - -
Aed1g1367 769 CDD GBP 39 237 - -
Aed1g1367 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 245 IPR027417 -
Aed1g1367 769 Hamap Protein SEY1 [SEY1]. 11 720 IPR008803 -
Aed1g1367 769 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 8 629 - -
Aed1g1367 769 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 630 744 - -
Aed1g1367 769 MobiDBLite consensus disorder prediction 716 769 - -
Aed1g1367 769 Pfam Sey1 three-helix bundle domain 636 718 IPR046758 -
Aed1g1367 769 Pfam Sey1 three-helix bundle domain 321 633 IPR046758 -
Aed1g1367 769 PANTHER PROTEIN SEY1 8 629 IPR008803 -
Aed1g1367 769 PANTHER PROTEIN SEY1 630 744 IPR008803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1367 Aed-Chr1 12661440 12668594 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1367 K22698 - gmx:100797516 1258.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1367 1 12661440 12668594 Aed2g0300 2 1971082 1980207 PCT