Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1183 ATGCAAACTACGCATAAGTGCCACTCCTCCCTTACCGCGGTGTTTCCACGCAGTGATATTGAAACTCGAAAAGCTCTTTCTCTCCCTGTGAGGGTCCACAGGAAGCAGGAAAAATTAAAAGCAAAGAAGAAGATGGAAATTGATCTTTCTCCTCAGTTGGCCAAGAAAGTTTATGGAGGCAATGGTGGGTCCTACTATGCCTGGTCCCCCTCCGAGCTTCCCATGCTCCTCCAAGGGAACGTCGGTGCCTCCAAGCTCGCTCTCAACAAATACGGTTTCGCTCTTCCTCATTACTCTGACTCTTCCAAACTCGCTTATGTTCTCCAAGGGAGTGGAGTGGCTGGAATAGTGGTACCTGAATCAGAAGAGAAGGTTGTTGCAATAAAGAAGGGTGATGCCTTGGCACTCCCCTTTGGTGTTGTGACCTGGTGGTATAACAAGGAAGACACCGAGTTGGTTGTTCTGTTCCTTGGAGACACTTCCAAGGCTCACAAGCCTGGTCAATTCACTGACTTTTTCCTCACTGGTTCCAATGGAATCTTCACTGGCTTTTCCACTGAGTTTGTGGCCAGGGCTTGGGACTTGGAAGAGACTCATGTCAAGACCCTTGTTGGAAAACAACCAGCCATAGGGATTGTGCAGCTGGAAGGAAACAACACCAACCTTCCCGAGCCTAAGCCGGAGCACCGGAATGGCATGGCCTTGAACTGCGAAGAGGCTCCATTGGATGTTGACATTGAGGGTGGTGGAAGGGTTGTGGTGTTGAACACCAAGAATCTTCCCTTGGTTGGTGAGGTTGGACTTGGAGCTGATCTTGTGAGGCTGAATGGAAGAGCCATGTGTTCTCCTGGATTCTCTTGTGATTCTGCTTTGCAGGTTACTTACATTGTCAGGGGTAGTGGCCGGGTTCAGGTTGTTGGTGTTGATGGCCGTAGGGTTTTGGAGACAACTGTCAAAGCTGGTAATTTGTTCATTGTGCCAAGGTTTTTTGTGGTCTCCAAGATTGCTGATCCTGATGGACTCGAATGGTTCTCTATCATCTCCACCCCTAATCCTATATTTACCCATTTGGCTGGAAGTTCATCCGTGTGGAAGGCTTTATCACCTTCGGTTCTGGAAGCTGCTTTCAATGTAGATCCAGAAGTTGAGCAACTGTTCCGTTCAAAGAGGACTGTCGATGCCATTTTCTTCCCTCCACCAAACTAG 1206 0.4859 MQTTHKCHSSLTAVFPRSDIETRKALSLPVRVHRKQEKLKAKKKMEIDLSPQLAKKVYGGNGGSYYAWSPSELPMLLQGNVGASKLALNKYGFALPHYSDSSKLAYVLQGSGVAGIVVPESEEKVVAIKKGDALALPFGVVTWWYNKEDTELVVLFLGDTSKAHKPGQFTDFFLTGSNGIFTGFSTEFVARAWDLEETHVKTLVGKQPAIGIVQLEGNNTNLPEPKPEHRNGMALNCEEAPLDVDIEGGGRVVVLNTKNLPLVGEVGLGADLVRLNGRAMCSPGFSCDSALQVTYIVRGSGRVQVVGVDGRRVLETTVKAGNLFIVPRFFVVSKIADPDGLEWFSIISTPNPIFTHLAGSSSVWKALSPSVLEAAFNVDPEVEQLFRSKRTVDAIFFPPPN 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1183 401 Gene3D Jelly Rolls 31 217 IPR014710 -
Aed1g1183 401 Gene3D Jelly Rolls 238 401 IPR014710 -
Aed1g1183 401 CDD cupin_11S_legumin_N 48 217 - -
Aed1g1183 401 SMART Cupin_1_3 240 384 IPR006045 -
Aed1g1183 401 SMART Cupin_1_3 47 201 IPR006045 -
Aed1g1183 401 PANTHER - 46 392 - -
Aed1g1183 401 PRINTS 11-S seed storage protein family signature 339 357 IPR006044 GO:0045735
Aed1g1183 401 PRINTS 11-S seed storage protein family signature 361 378 IPR006044 GO:0045735
Aed1g1183 401 PRINTS 11-S seed storage protein family signature 256 276 IPR006044 GO:0045735
Aed1g1183 401 PRINTS 11-S seed storage protein family signature 321 336 IPR006044 GO:0045735
Aed1g1183 401 PRINTS 11-S seed storage protein family signature 303 319 IPR006044 GO:0045735
Aed1g1183 401 PANTHER OS03G0336100 PROTEIN-RELATED 46 392 - -
Aed1g1183 401 CDD cupin_11S_legumin_C 243 398 - -
Aed1g1183 401 SUPERFAMILY RmlC-like cupins 59 390 IPR011051 -
Aed1g1183 401 Pfam Cupin 55 200 IPR006045 -
Aed1g1183 401 Pfam Cupin 244 383 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1183 Aed-Chr1 11493296 11496032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1183 101 381 Miscellaneous Gene Families AT2G18540 23.220 3.49e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1183 - - gmx:100795038 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1183 1 11493296 11496032 Aed1g1183 1 11493296 11496032 ECH
Aed1g1183 1 11493296 11496032 Aed5g0432 5 3034107 3041857 PCT