Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1179 ATGGAGTTCCTCACTTTACTTTATGGTGCTATGGCATTGTACTTGTGTTTCCTGATCTGGAAATTGTTTGATCAGAGAAGGGACCAAGAATGCTACTTATTGGACTACCAGCTGTACAAGCCAATCGATGAAAGAAAGCTTGGAACTTTACCCTGTGGGAAGATCATAGGGAGGAACAAGCAGTTAGGTCTGAATGAGTACAAGTTCCTCCTCAAGGCCATTGTCAACTCCGGCATTGGCGAGGAAACTTACGCTCCAAGAAACGTCATCGAGGGTCGCGAGGCAAATCCAACATTGGACGATGGTGTCACAGAAATGGAGGAGTTTTTCCACGACAGCATTACCAAACTCCTTGAAAGGTCAGGAATTTCCCCCTCAGAAATCGATGTCCTTGTGGTTAATGTCTCTATGTTCGCTGTTGTTCCTTCCTTAACCTCGAGAATCATCAACCACTACAAAATGAGGGAGGACGTGAAGTCTTACAACCTCACTGGCATGGGGTGCAGTGCCAGCCTCATTTCATTGGACATCATAAAGAACGTTTTCAAGTCACAGAAGAACAAGTGTGCTCTTTTGGTGACTTCAGAGTCTCTGAGTCCAAACTGGTACAATGGCAACGACAGATCAATGATTCTTGCCAACTGTCTCTTCAGGACAGGTGGATGTGCGATTCTCTTGACAAACAAAAGGTCATTGAAGCACAGGGCCATGTTGAAGTTGAAGTGCTTGGTGAGGACTCATCATGGGGCCAAAGAAGATGCCTATAGCTGCTGCAATCAGAAGGAAGATGAGCAAGGAAAGCTTGGTTTTTTCCTGGCCAAAAACCTCCCAAAGGCAGCCACAAGAGCCTTTGTTGAGAACCTAAGGGTGTTAGCTCCCAAGGTTTTACCAACAAGGGAGTTGCTGAGGTTTCTGATAGTGTCCCTGATAAAAAAGCTGAGGCAAACAAGTTCCCTAAAGGGGGGATCTAGCAAATCAAGCAAATCCCCATTGAACTTCAAGACCGGGGTGGAACATTTCTGCCTCCACACAGGAGGAAAAGCAGTGATAGATGGGATTGGAATGAGCTTGGATCTGTGTGAGTATGAGCTTGAGCCAGCAAGGATGACACTGCACCGTTTTGGCAACACGTCAGCAAGTAGCCTTTGGTATGTGTTAGGGTACATGGAAGCCAAAAAGAGGCTCAAGAAAGGTGACAGAGTATTGATGATAAGCTTTGGTGCTGGCTTTAAATGCAACAGCTGTTTGTGGGAAGTAATGAAGGATCTTGGGGATCACACTAATGTCTGGACTGATTGCATTCATGACTACCCACCAGAGTCCTTGGCCAACCCTTTCATGGAGACTTTCGGTTGGATCAACAATGTTGAAGATTCTACCAACTTCAAACTTCCTGATTTGTTTCTCAAGTAA 1413 0.4551 MEFLTLLYGAMALYLCFLIWKLFDQRRDQECYLLDYQLYKPIDERKLGTLPCGKIIGRNKQLGLNEYKFLLKAIVNSGIGEETYAPRNVIEGREANPTLDDGVTEMEEFFHDSITKLLERSGISPSEIDVLVVNVSMFAVVPSLTSRIINHYKMREDVKSYNLTGMGCSASLISLDIIKNVFKSQKNKCALLVTSESLSPNWYNGNDRSMILANCLFRTGGCAILLTNKRSLKHRAMLKLKCLVRTHHGAKEDAYSCCNQKEDEQGKLGFFLAKNLPKAATRAFVENLRVLAPKVLPTRELLRFLIVSLIKKLRQTSSLKGGSSKSSKSPLNFKTGVEHFCLHTGGKAVIDGIGMSLDLCEYELEPARMTLHRFGNTSASSLWYVLGYMEAKKRLKKGDRVLMISFGAGFKCNSCLWEVMKDLGDHTNVWTDCIHDYPPESLANPFMETFGWINNVEDSTNFKLPDLFLK 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1179 470 Gene3D - 66 419 IPR016039 GO:0016746
Aed1g1179 470 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 337 418 IPR013747 -
Aed1g1179 470 PANTHER 3-KETOACYL-COA SYNTHASE 1 459 IPR012392 GO:0006633|GO:0016020|GO:0016747
Aed1g1179 470 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 452 IPR012392 GO:0006633|GO:0016020|GO:0016747
Aed1g1179 470 CDD CHS_like 12 417 - -
Aed1g1179 470 Pfam FAE1/Type III polyketide synthase-like protein 25 312 IPR013601 GO:0006633|GO:0016020|GO:0016747
Aed1g1179 470 SUPERFAMILY Thiolase-like 71 420 IPR016039 GO:0016746
Aed1g1179 470 PANTHER 3-KETOACYL-COA SYNTHASE 1 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1179 Aed-Chr1 11468997 11470409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1179 19 469 Acyl Lipid Metabolism Gene Families AT2G28630 68.913 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1179 K15397 - gmx:100790992 885.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1179 1 11468997 11470409 Aed1g1179 1 11468997 11470409 ECH
Aed1g1179 1 11468997 11470409 Aed5g0446 5 3157018 3158442 ECH
Aed1g1179 1 11468997 11470409 Aed5g0446 5 3157018 3158442 PCT