Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0961 ATGGATCGCCGCATCTACGGCGTCTCAAACCTCCACATCAACACTCTTCTATTCCTTCTCTTCCTTGTTTCTGTTTTCCCCAAAGCATTAACGTCGCGGGTGTCTTCTCCGTCGTCACCGACAGGTCAAATTAACTCAAACTCAATCCTCGTGGCTCTTCTCGACTCGCATTACACGGAACTCGCGGAGCTTGTCGAAAAGGCCATGCTGTTACAAAAACTAGAAGACACTGTCGCCACTCATAACATAACAATCTTCGCTCCCACCAACGAAGCCTTGGACCGAAACCTCGACACTGATTTCAAGCGCTTCCTTCTCGAACCCGCCAATCTTCACTCCCTCCAGACGCTTCTCCTCTCTCACATCATCCCCGCCCAAATCGGTTCCAAAACCCTAACCCTAACCCGCCACGTCACCACTCTCTCCAACCACCACCTCCACCTCTCCGAAAACCTCACTACCGTCGACGGAGCTAAAGTTACCCACCCGGATTTCCTGACCCGACCCGACGGCGTCATCCACGGCATCGACCGCCTCCTCCTCCCCCGCTCCGTCGAGGACGACTTCAATCGCCGCCGCAGCCTCCGCTCCATCACCGCCGTCAAACCCGAGGCCGCGCCGGAGGTCGACCCGAGAACGCACCGTCTCAAAAAAACTCCCCCGCCGGCGAAACCCGGCTCCCAGCCGGCTCTTCCGATCTACGACGCAATGGCTCCGGGACCGTCCCTGGCTCCGGCGCCGGCGCCGGGGCCAGGCGGCCCGCACCACCACTTCAACGGCGAAAGACAAGTCAAGGATTTCATCCACACCCTCCTCCACTACGGCGGGTACAACGAGATGGCGGACATTCTGGTGAATCTAACGTCGTTGGCCGTTGAAATGGGTCGTTTAGTTTCCGAGGGCTACGTTCTCACCGTTTTGGCTCCAAACGACGAAGCGATGGCGAAGCTAACGACGGAGCAGCTGAGCGAACCGGGGGCGCCGGAGCAGATAATGTACTATCACATAATACCGGAGTACCAGACCGAAGAGAGCATGTACAATGCGGTTAGAAGGTTCGGTAAGGTTCGCTACGATACCCTACGTTTGCCGCATAAGGTGGTGTCTCAAGAAGCTGATGGGTCCGTTAAATTCGGCGAAGGAGACGGGTCGGCCTTTTTGTTCGACCCGGATATTTATATTGATGGTCGGATCTCAGTTCAGGGGATTGATGGGGTTTTGTTTCCGCTGGAGGAGGAAGAGGACCGGGTTCAACCGGTTAGTCGAACGGGTCAACCCGCTGCCAAAGTTGTTAAGCACAGGAGAGGTACATTTGATTTTACTGTTGTTGCCTTTGTTGTTTTGTTTGGGATTTTCTCTATGGATTAG 1368 0.5526 MDRRIYGVSNLHINTLLFLLFLVSVFPKALTSRVSSPSSPTGQINSNSILVALLDSHYTELAELVEKAMLLQKLEDTVATHNITIFAPTNEALDRNLDTDFKRFLLEPANLHSLQTLLLSHIIPAQIGSKTLTLTRHVTTLSNHHLHLSENLTTVDGAKVTHPDFLTRPDGVIHGIDRLLLPRSVEDDFNRRRSLRSITAVKPEAAPEVDPRTHRLKKTPPPAKPGSQPALPIYDAMAPGPSLAPAPAPGPGGPHHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLAVEMGRLVSEGYVLTVLAPNDEAMAKLTTEQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVSQEADGSVKFGEGDGSAFLFDPDIYIDGRISVQGIDGVLFPLEEEEDRVQPVSRTGQPAAKVVKHRRGTFDFTVVAFVVLFGIFSMD 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0961 455 Pfam Fasciclin domain 57 182 IPR000782 -
Aed1g0961 455 Pfam Fasciclin domain 303 365 IPR000782 -
Aed1g0961 455 ProSiteProfiles FAS1/BIgH3 domain profile. 45 180 IPR000782 -
Aed1g0961 455 MobiDBLite consensus disorder prediction 200 257 - -
Aed1g0961 455 SUPERFAMILY FAS1 domain 42 183 IPR036378 -
Aed1g0961 455 SMART fasc_3 84 183 IPR000782 -
Aed1g0961 455 SMART fasc_3 305 410 IPR000782 -
Aed1g0961 455 ProSiteProfiles FAS1/BIgH3 domain profile. 264 392 IPR000782 -
Aed1g0961 455 Gene3D FAS1 domain 287 409 IPR036378 -
Aed1g0961 455 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 446 IPR044654 -
Aed1g0961 455 Gene3D FAS1 domain 49 183 IPR036378 -
Aed1g0961 455 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 446 - -
Aed1g0961 455 SUPERFAMILY FAS1 domain 243 410 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0961 Aed-Chr1 9905595 9906962 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0961 - - gmx:100782264 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0961 1 9905595 9906962 Aed5g0719 5 5367242 5370532 PCT