Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0928 ATGGCGACTCTTGATTCCGACGTGACCATGGTTCTGGCCGGCGAGCCCTCGCGCAGCGTTGGTCCTTCTTCTTCCACCAAGAAGCCGAAGCGATTCGAGATCAAAAAGTGGAATGCTGTATCTCTCTGGGCTTGGGATATTGTTGTGGATAATTGCGCTATTTGCCGGAATCATATCATGGATCTCTGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGGAGTATGTAACCATGCGTTTCACTTCCATTGCATCAGCCGATGGCTCAAGACTCGTCAAGTATGTCCTCTAGATAATAGCGAGTGGGAGTTTCAGAAATATGGTCACTAG 357 0.5014 MATLDSDVTMVLAGEPSRSVGPSSSTKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0928 118 ProSiteProfiles Zinc finger RING-type profile. 63 108 IPR001841 -
Aed1g0928 118 PANTHER RING BOX 1 118 - -
Aed1g0928 118 CDD mRING-H2-C3H2C2D_RBX1 50 111 - -
Aed1g0928 118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 118 IPR013083 -
Aed1g0928 118 SUPERFAMILY RING/U-box 30 115 - -
Aed1g0928 118 Pfam RING-H2 zinc finger domain 50 108 IPR024766 GO:0008270
Aed1g0928 118 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBX1 1 118 - -
Aed1g0928 118 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0928 Aed-Chr1 9647599 9649765 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0928 K03868 - gmx:100526919 252.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0928 1 9647599 9649765 Aed5g0752 5 5630610 5633385 PCT