Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0896 ATGTCGTCCAAGATGTTGGGAGTCTTTGTAGGACTTTTATTTGTGGGGTTAGCTGCCTCTGCCAAGTTTGATGAACTCTTCCAGCCCGGTTGGGCTATGGACCATTTCATCCATGATGGAGAACTCCTCAAACTCAAACTTGATAACTATTCTGGTGCTGGATTTGGATCTAAAAGCAAATATATGTTTGGGAAGGTGACCATCCAGCTCAAGCTTGTGGAGGGTGACTCTGCTGGAACCGTTACTGCTTTCTATATGTCATCAGACGGCCCAACACACAACGAGTTTGATTTCGAGTTTCTGGGGAACACCACAGGGGAACCTTACTCAGTCCAAACGAACGTGTATGTGAATGGCGTTGGCAACAGGGAGCAGAGACTCAACCTCTGGTTCGACCCCACCAAGGAATTCCACACCTACTCCATCTTCTGGAACCAGCGCCAAGTTGTATTCCTAGTGGATGAGACGCCAATAAGGGTGCACACAAACCTAGAACACAAGGGCATTCCGTTCCCGAAGGACCAGGCCATGGGCGTGTACAGTTCTATATGGAACGCAGACGATTGGGCCACGCAAGGTGGTCGTGTGAAGACAGATTGGAGCCACGCGCCCTTCATTGCTACCTACAAGGACTTCCAAATCGACGCGTGCGAGTGCCCCGTGCCAGTGACGTCAGCGGATAATGCTAAGAAATGTAACAGCAGCGAGGACAAGAAGTATTGGTGGGACGAACCAACGTTGTCGGAACTCAACTTGCACCAGAGCCACCAGCTTATGTGGGTTAGGGCTAACCATATGGTCTATGACTATTGCTCCGACAATGCTAGATTCCCCGTTGTACCTGCTGAGTGTGTTCACCACCGTCACCATTGA 873 0.5006 MSSKMLGVFVGLLFVGLAASAKFDELFQPGWAMDHFIHDGELLKLKLDNYSGAGFGSKSKYMFGKVTIQLKLVEGDSAGTVTAFYMSSDGPTHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPTKEFHTYSIFWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFIATYKDFQIDACECPVPVTSADNAKKCNSSEDKKYWWDEPTLSELNLHQSHQLMWVRANHMVYDYCSDNARFPVVPAECVHHRHH 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0896 290 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 237 284 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Aed1g0896 290 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 12 288 IPR044791 GO:0004553
Aed1g0896 290 Gene3D - 15 290 - -
Aed1g0896 290 PRINTS Glycosyl hydrolase family 16 signature 111 124 IPR008264 GO:0004553|GO:0005975
Aed1g0896 290 PRINTS Glycosyl hydrolase family 16 signature 53 71 IPR008264 GO:0004553|GO:0005975
Aed1g0896 290 PRINTS Glycosyl hydrolase family 16 signature 129 146 IPR008264 GO:0004553|GO:0005975
Aed1g0896 290 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 21 209 IPR000757 GO:0004553|GO:0005975
Aed1g0896 290 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 12 288 - -
Aed1g0896 290 CDD GH16_XET 18 284 IPR016455 GO:0010411|GO:0016762|GO:0042546
Aed1g0896 290 Pfam Glycosyl hydrolases family 16 27 201 IPR000757 GO:0004553|GO:0005975
Aed1g0896 290 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 288 IPR013320 -
Aed1g0896 290 PIRSF EndGlu_transf 2 289 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0896 Aed-Chr1 9459873 9462478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0896 53 289 Glycoside Hydrolase AT4G03210 79.325 1.51e-146 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0896 K08235 - gmx:100801567 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0896 1 9459873 9462478 Aed1g0896 1 9459873 9462478 ECH
Aed5g0768 5 5755168 5758241 Aed1g0896 1 9459873 9462478 PCT