Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0892 ATGGATCAGTTTGTGCCAGGTTTAGAGAAAGGCAAAGGCATGTACCTTTTGTTCACCAAATCAGAAGCCAAAACCCCTGGTGGACTCCTTGCTCGTCCAGTTTTGACAAGCTATTACAGAAGCTCACATTTCAATAACCGCAAACACGATCCCTACACGAACTACACAAGCCCCAATGAAACCATTCTTTGCCCTGACTCTTACCAAAGCATGTACTCTCAGTTACTTTGTGGCCTTTTCCAAAACGAGGATGTTCTTCGTGTTGGAGCAGTCTTCGCCTCAGGTTTCATTCGTGCCCTTAAGTTCCTCGAAAAACACTTCGTGTCTTTGTGTAATGACATAAGAAGGGGCACCTTAGACGCCAAAATCACTGACCCTTTTGTGAGAGAGGCTGTTATGAAAGTACTTAAACCAAATCCCACGCTTGCGGATTTCATAGAAGCTGAATGCATGAAAGGGTCGTGGAAGGGAATTATTACTAGGATATGGCCTAACACCAAGTATGTTGATGTTATTGTCACGGGAACCATGTCTCAGTACATTCCAATATTGGATTATTATAGCAATGGTCTCCCTCTTGTGTGCACCATGTATGCTTCTTCTGAGTGCTATTTTGGCCTCAATTTGAACCCCTTGTGTGACCCAAGTGAGGTGTCTTACACCCTCATTCCCATCATGGCCTACTTTGAGTTCTTGCCCCTTGACGAGATCAATGGACATACTGATTCAATTTCTCAACTGGAGCAAGAACAGTTGGTAGATCTTGCAGATGTGAAGCTGGGTCAAGAGTATGAGCTTGTGGTCACCACTTATGCAGGACTTTATAGATACCGGGTTGGTGACATTCTCCGTGTAGCCGGATTCAAGAACAAGGCTCCTCAATTCAACTTCGTGTGTCGAAAAAACGTGGTTCTGAGCATTGATTCCGACAAAACCGACGAAGTTGAGCTACAAAATGCAGTGAAGAGTGGAGCTGATCATCTGGCTCAATTTGGTGCATCTCTAACAGAGTACACAAGCTGCGTGGACACGTCAACAATCCCTGGCCACTACGTCCTATACTGGGAAATTAGCACAAATGACCAAACCCCAACAACTCCTTCTTCTGTTTTGGGGCATTGTTGCCTTGCAATTGAGGAATCACTAAACAGCGTGTATCGACAAGGCAGGGTATCAGAGTCTATTGGACCCTTGGAAATCAAGGTGGTTGAGAATGGCACATTTGACAAGCTTATGGACTTTGCTCTTAGCCAGGGTGCATCCATAAATCAATACAAGACACCTCGTTGCGTTACATATGCTCCCATTCTGGACCTTCTAAACTCTAAAGTTGTGTCCAATTACTTTAGCCCAAAATGCCCGAATTGGGTTCCTGGTCACAAGGACTGGTGA 1392 0.4483 MDQFVPGLEKGKGMYLLFTKSEAKTPGGLLARPVLTSYYRSSHFNNRKHDPYTNYTSPNETILCPDSYQSMYSQLLCGLFQNEDVLRVGAVFASGFIRALKFLEKHFVSLCNDIRRGTLDAKITDPFVREAVMKVLKPNPTLADFIEAECMKGSWKGIITRIWPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGLNLNPLCDPSEVSYTLIPIMAYFEFLPLDEINGHTDSISQLEQEQLVDLADVKLGQEYELVVTTYAGLYRYRVGDILRVAGFKNKAPQFNFVCRKNVVLSIDSDKTDEVELQNAVKSGADHLAQFGASLTEYTSCVDTSTIPGHYVLYWEISTNDQTPTTPSSVLGHCCLAIEESLNSVYRQGRVSESIGPLEIKVVENGTFDKLMDFALSQGASINQYKTPRCVTYAPILDLLNSKVVSNYFSPKCPNWVPGHKDW 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0892 463 Pfam GH3 auxin-responsive promoter 9 432 IPR004993 -
Aed1g0892 463 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE 1 462 - -
Aed1g0892 463 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 1 462 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0892 Aed-Chr1 9447119 9448878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0892 5 450 EF-hand Containing Proteins AT1G23160 51.868 3.96e-158 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0892 K14487 - gmx:100806653 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0892 1 9447119 9448878 Aed1g0892 1 9447119 9448878 ECH
Aed1g0892 1 9447119 9448878 Aed5g0781 5 5872206 5875951 PCT