Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0717 ATGGAGTCAATACTGGGTCGGGCTCTGGAGTACACTCTCAAGTACTGGCTCAAGTCCTTCTCCCGCGAACAGTTCAAGCTCCAAGGCCGCACCGTTCACCTCTCCAATTTAGATATCGATGGCGACGCCTTGCATTCCAGCGTCGGATTGCCGCCGGCGCTCAACGTCGCCACCGCCAAAGTCGGCAAGCTAGAGATAACAGTTCCGTCGGTGAGCAATGTGCAAACGGAGCCAATCGTGGTGCATATTGATAGACTCGATCTGGTTCTCGAGGAGAGTTCTGATTCTGATGAATCTCTTAGTTCGAACTGTTCCACGCCGTCGGCTGCCGTAGCCAAGGGAAGTGGTTATGGTTTTGCTGATAAGATTGCAGATGGCATGACTATACAAATTCAAACGGTTAATCTATTACTTGAAACTCGTGGTAGTTCTCGTCGCCAAGGGGGAGCAACATGGGCTCCACCTATGGCATCTATCACCATACGCAACCTTTTGTTGTATACCACAAATGAAAACTGGCAGGTTGTAAATCTTAAGGAAGCACGGGAATTCTCCAGTAACAAGAAGTACATATATGTCTTCAAAAAACTGGAATGGCAATCTTTGTCTATTGATCTTTTACCTCATCCCGACATGTTCACAGAGGCTACATTGGACCTCTCTCAAGAAGGATCAAATTTTAGGGATGATGATGGTGCAAAACGTGTATTCTTTGGAGGAGAGCGTTTTATAGAAGGAATATCAGGAGAAGCATATATCACAATTCAGAGAACTGAATTGAATAGTCCACTTGGGCTTGAGGTTCAATTGCACATCAATGAAGCTGTTTGCCCTGCATTAAGCGAACCAGGATTACGTGCACTTCTCCGCTTTATGACAGGAGTATATGTTTGTCTAAACAGGGGTGCTGTTGATTCCAAGGTTCAGCAGCGGTCCACTGAAGCAGCTGGGCGTTCTCTTGTCTCAATTGTCATAGATCATATATTTCTTTGTATTAAAGATACAGAATTCCAGCTTGAGCTTTTGATGCAGTCCCTCTGTTTTTCTCGGGCCAGTCTTTCTGAAGGAGATAATGATAATAACTTGACCAGAATTACCATTGGTGGCTTATTTTTAAGGGACACCTTTTGTAGCCCTCCATGTATCTTAGTTCAACCATCAATGCAAGCTGTCACAAGAGATGCGTTCCATGTGCCAGAATTTGCCAGAAGCTTTTGCCCTCCAATATATCCTTTACAAGAACAGCAGTGGCAATTGATTGAGGGAACCCCTCTAATATGCCTCCATTCTCTTAAAATCATGCCTTCTCCACTTCCACCATCCTTTGCTTCTGAAACTGTTATTGACTGTCAGCCTCTTGTGATTCATCTCCAGGAAGAATCATGCCTGAGGATATCCTCTTTATTAGCTGATGGTATTGCTGTCAATCCTGGTGACATTTTACCAGATTTCTCAGTGAAATCTTTTATTTTTAATCTAAAAGGACTGGATCTTACAGTTCCTCTTGACAAGACCAAATTGGATATTTCCAAAAGTGACATGGACAACACAGTCCAGACCTCCTTTGCTGGAGCAAGGCTTCATATTGAAAGCCTTTGCTTTTTAAATTCACCCTCACTGAAACTAAGAATTCTGAACCTGGAGAAGGATCCTGCTTGCTTCAGTCTTTGGGAAGGTCAACCAATTGATGCTAGCCAGGAGAAATGGACTGCTAGAGCATCCCAGCTTACTTTGTCTCTGGAAGCATGTACTGACAGAACTGGATGTCAAAATTCCCTTGAACAGGCATCAGGATTGTGGAGATGTGTTGATCTGAAAGATGCTTGCATTGAAGTAGCTATGGCAACTGCTGATGGCAATCCATTGTTACAAGTTCCCCCTCCTGGGGGTATTGTCAGGGTTGGAGTTGCTTGTGAACAGTATCTGTCCAACACTTCTGTTGAACAATTGTTTTTCGTCCTGGATCTATATGGTTATTTTGGGAGAGTTAGTGAAAAGATAGCAATGGCCGGAAAAAGGAAACAATTGGAGGACATTAGGGACAAATCTTTTAGTGGAAAGCTGATGGACAAGGTTCCTAGTGATGCTGCTGTGAATTTATCAGTGAAAAACCTCCAACTCCGATTTCTGGAGTCATCTTCTGTGAATATTGAGGGGATGCCTTTAGTGCAATTTGTTGGAGATGATTTATTTACTAGTGCCACTCATAGAACCCTTGGTGGGGCTATTATTGTTTCATCTATTTTACATTGGGAGAGTGTTGAGATAGGTTGTGTAGATGCTGAGGGGAACTTGCCGTGTGAAAATGGCTCGTTCTTGAGTTCTAAGGAAAATGCTCTCTCATTGAGTGATAATGGATATCCTCAACTAAGAACTGTTTTATGGGTGCATAAGAATGAGAAACATCTATTGAATGGAAATGCTCATTCAGTCCCTTTTCTGGACATAAGCATGGAGCATGTCATACCATTATATGAACAAGACTTGGAGTCTCATAGTTTGAATGTCTCAGCTTCTGTATCTGGTGTTCGTCTTGCTGGAGGAATGAACTACGCTGAAGCCCTCCTGCATAGATTTGGAATATTTGGGCCTGATGGAGCTCCTGGGATGGGTCTTTGTAAAGGGTTGGAAAACTTACAAAAAGGACCATTATCAAAACTTTTTAAGGCAACTCCTCTCATTGTTGATAATTCAGAAGATGTTGGAAGTATGAGAGAAGGGAAAGAAACTGGTTTTCCCCAATTGAAGAAGCCTGATGATGTGGATGTAACTATAGAATTGAGAGACTGGTTATTTGCCCTTGAAGATGCACAAGAGACAGCTGAAAGATGGTGGTTCTCAAGCCATGTAGATGAAGACAGAGAAGAGAAGAGTTGGCATGCATCTTTCCATGGTTTACGAGTAAATGCAAAATGTAGCCCGATGAATGTTTCAGATGGAAATGGACAATTGCAAAGAATAAAACAACATCCAGTAGAATTGATTACAGTTGGAATTCAAGGTCTGCAAATCTTGAAGCCTCATTTGCAAAACGACATTCCTTCATCAACGCTAATTGCAAATGGGGGTAAAGGATTCACCGACACAGTTGGAGGAATTGGTCTTGAAGTTCACTTGATATTAGGTGGGGAGAATGTCGATGATGAAATGGTCAATTGGAAAGTGGAAAACCTAAAATTCTCTGTTAAACACCCGATTGAGGCTGTTGTAACCAAGGATGAGGTTCAGCACCTCACTTTTCTGTGCAAATCTGAAATTGACTCAATTGGCCGGATAACTGCTGGAATTATACGATTGCTGAAGTTAGAAGGTTCTGTTGGTCAGTCTGTAATAGATCAACTAGGCCACCTAGGAAGTGAAGGCATTGATAAGATTTTCTCTTCTGAAAAGTATAGTAGAGACGGAAGTGTTGGTAGTAGAGGACTTTCTCCATTGCCAAATGTTATCATAAATGAAGAATCACAGAGAACTTTAGAACAAACATTGACTTTGTTTGAGGAAGCACTTGTGGATTCACAGGCTAAACTTAATGATTTAATCAGTGATATTGGTACTTCAGAGTCTTCCTCTCAACACCTTACCATCGTGCAACTGAGTCAAAAGATAGACACTATGCACAACTTGTTGATGCAATTGCGGAATCAAATTTGA 3651 0.421 MESILGRALEYTLKYWLKSFSREQFKLQGRTVHLSNLDIDGDALHSSVGLPPALNVATAKVGKLEITVPSVSNVQTEPIVVHIDRLDLVLEESSDSDESLSSNCSTPSAAVAKGSGYGFADKIADGMTIQIQTVNLLLETRGSSRRQGGATWAPPMASITIRNLLLYTTNENWQVVNLKEAREFSSNKKYIYVFKKLEWQSLSIDLLPHPDMFTEATLDLSQEGSNFRDDDGAKRVFFGGERFIEGISGEAYITIQRTELNSPLGLEVQLHINEAVCPALSEPGLRALLRFMTGVYVCLNRGAVDSKVQQRSTEAAGRSLVSIVIDHIFLCIKDTEFQLELLMQSLCFSRASLSEGDNDNNLTRITIGGLFLRDTFCSPPCILVQPSMQAVTRDAFHVPEFARSFCPPIYPLQEQQWQLIEGTPLICLHSLKIMPSPLPPSFASETVIDCQPLVIHLQEESCLRISSLLADGIAVNPGDILPDFSVKSFIFNLKGLDLTVPLDKTKLDISKSDMDNTVQTSFAGARLHIESLCFLNSPSLKLRILNLEKDPACFSLWEGQPIDASQEKWTARASQLTLSLEACTDRTGCQNSLEQASGLWRCVDLKDACIEVAMATADGNPLLQVPPPGGIVRVGVACEQYLSNTSVEQLFFVLDLYGYFGRVSEKIAMAGKRKQLEDIRDKSFSGKLMDKVPSDAAVNLSVKNLQLRFLESSSVNIEGMPLVQFVGDDLFTSATHRTLGGAIIVSSILHWESVEIGCVDAEGNLPCENGSFLSSKENALSLSDNGYPQLRTVLWVHKNEKHLLNGNAHSVPFLDISMEHVIPLYEQDLESHSLNVSASVSGVRLAGGMNYAEALLHRFGIFGPDGAPGMGLCKGLENLQKGPLSKLFKATPLIVDNSEDVGSMREGKETGFPQLKKPDDVDVTIELRDWLFALEDAQETAERWWFSSHVDEDREEKSWHASFHGLRVNAKCSPMNVSDGNGQLQRIKQHPVELITVGIQGLQILKPHLQNDIPSSTLIANGGKGFTDTVGGIGLEVHLILGGENVDDEMVNWKVENLKFSVKHPIEAVVTKDEVQHLTFLCKSEIDSIGRITAGIIRLLKLEGSVGQSVIDQLGHLGSEGIDKIFSSEKYSRDGSVGSRGLSPLPNVIINEESQRTLEQTLTLFEEALVDSQAKLNDLISDIGTSESSSQHLTIVQLSQKIDTMHNLLMQLRNQI 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0717 1216 Coils Coil 1195 1215 - -
Aed1g0717 1216 PANTHER UNCHARACTERIZED 1 1215 IPR026728 -
Aed1g0717 1216 Pfam N-terminal region of Chorein or VPS13 1 99 IPR026854 -
Aed1g0717 1216 PANTHER AMINO-TERMINAL REGION OF CHOREIN, A TM VESICLE-MEDIATED SORTER 1 1215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0717 Aed-Chr1 8299201 8307904 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0717 - - gmx:100803142 2262.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0717 1 8299201 8307904 Aed1g0717 1 8299201 8307904 ECH
Aed1g0717 1 8299201 8307904 Aed5g1022 5 8084867 8088888 PCT