Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0464 ATGTCTCTCTTTGCTGCATTTTCCATTGGTAAAGTTGCCAAGGATGCTGCTGGGGTTGCAGGAAATGTCTTTGCTTTTGGGTTGTTTGTGTCTCCCATACCCACATTTAGGAGGATTATCAGAAATGGGTCAACAGAGATGTTCTCTGGGTTGCCATATATTTACTCTCTTCTGAACTGCTTGATCTGCTTGTGGTATGGCACACCTCTCATCTCTGCTGATAATTTGTTGGTTACAACTGTTAATTCAATTGGAGCAGCGTTTCAATTTGTGTACACAATCATCTTCCTGATCTTGCAAATAGATGACAGTGTAACGCGGCGGTTCTTTGTGGGATTCTTGAGCTGTGCATCTCTCATTTCAATGTTTGCCTCTCCACTGTTCATAATTAAATTGGTCATTCAGACAAAGAGTGTTGAATTCATGCCATTTTATCTCTCACTTTCCACCTTCCTAATGAGCACCTCTTTCTTACTTTATGGAGTATTCAACGATGATGCCTTTATTTATGTGCCAAATGGGATAGGAACCCTTTTGGGAATGGTACAGTTGATGTTATACTTCTACTTTGAGAGTAAATCTAGAGAAGACTCCAGAGAACCTCTGATAGTTCAACACAAATTTAATAACTTCAACGACAGAAAAGGAAAACACTTTGATTTTCCAGTTTCATTCATAAATCATAGCTGGTCTCTGTTGTCTTCTTTCTCCGTGGGTTGTAGAACAACAAGACATTGTAGAAAAAAAAAAATGCAATCATCAATTGCGTGCTCCCCTCATAGAGTGCAATCACACTCACACATTAACTTTGTTCCAACAACCATTTCCCTCAAAACCAAACACTTCATTTCAACTCTAACCAAACCCACTTCTGGGATCACACCCAGATGCAATTCTCAACCTCAACCAGTGCTAAACCTCTGCCCATCAAAATCACCAAGAAACTTTTGTTCCAATGTTGGTCCACTTCGGTGCGGCATTTCGTCGAACGAGTACGGTGCGAACAAAGGTAGGAGCGTTGGGGAGTGGCTTGCGGTGGCCAGTGATGTGCTTTCAACGGGGTTTCCGTTGTGGGTGTCGATTGCGTCAGTTTTGGGGCTGATGAAACCAAGTTACTTCAATTGGGTCACTCCCAAATTGAGCATCACGGGGCTGAACATTATAATGCTGGGTATGGGTATGACTCTCACTCTTGATGATCTTCGTGGGGTTCTTGCATTGCCTAAACAAGTTCTCTCTGGCACCGCTAGTAACATTATAACTTATCTTGCACGTGCAAATGTGGCTCTTTCTGTGATAATGACAACTGCAAGCACCATATCTGCCATGATCACGACTCCTTTTCTGACAGCAAAACTTGCTGGTAAATATGTAGCAGTGGATGCACCAGGCTTATTGATGTCAACATTGCAAGTTGTGCTTGTTCCTGTGTTGGCTGGTGCATTTCTGAATCAGTTTTTCCAACCCCTTGTTAAATTTGTCTCTCCATTGATGCCACCAATTGCAGTAATAACTGTGGCAATTTTGTGTGGAAATGCTATTGGCCAGAGTTCTTCAGCAATCCTTGCATCTGGTGGAAAAGTGGTTTTAGCCACATTCCTTCTTCAAGCCTCTGGATTTTTCTTTGGTTACCTATTTTCACGTTTGATTGGGCTAGATGTGTCATCATCACGAACCATATCCTCTCAGGTTGGCATGAAGCACTTTGGAGATCCCCTAACTGCAGTGCCTGGTGCTGTTGCAATTGTGAATCAGTCAATCATTGGTAGTATCCTTGCAGAATTTTGGAGACGCTCTGTTCCTGTTAAAGTGAAGGAGTGA 1821 0.4239 MSLFAAFSIGKVAKDAAGVAGNVFAFGLFVSPIPTFRRIIRNGSTEMFSGLPYIYSLLNCLICLWYGTPLISADNLLVTTVNSIGAAFQFVYTIIFLILQIDDSVTRRFFVGFLSCASLISMFASPLFIIKLVIQTKSVEFMPFYLSLSTFLMSTSFLLYGVFNDDAFIYVPNGIGTLLGMVQLMLYFYFESKSREDSREPLIVQHKFNNFNDRKGKHFDFPVSFINHSWSLLSSFSVGCRTTRHCRKKKMQSSIACSPHRVQSHSHINFVPTTISLKTKHFISTLTKPTSGITPRCNSQPQPVLNLCPSKSPRNFCSNVGPLRCGISSNEYGANKGRSVGEWLAVASDVLSTGFPLWVSIASVLGLMKPSYFNWVTPKLSITGLNIIMLGMGMTLTLDDLRGVLALPKQVLSGTASNIITYLARANVALSVIMTTASTISAMITTPFLTAKLAGKYVAVDAPGLLMSTLQVVLVPVLAGAFLNQFFQPLVKFVSPLMPPIAVITVAILCGNAIGQSSSAILASGGKVVLATFLLQASGFFFGYLFSRLIGLDVSSSRTISSQVGMKHFGDPLTAVPGAVAIVNQSIIGSILAEFWRRSVPVKVKE 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0464 606 PANTHER SODIUM-BILE ACID COTRANSPORTER 291 414 IPR004710 -
Aed1g0464 606 PANTHER SODIUM-BILE ACID COTRANSPORTER 413 605 IPR004710 -
Aed1g0464 606 PANTHER SODIUM/METABOLITE COTRANSPORTER BASS1, CHLOROPLASTIC-RELATED 291 414 - -
Aed1g0464 606 PANTHER SODIUM/METABOLITE COTRANSPORTER BASS1, CHLOROPLASTIC-RELATED 413 605 - -
Aed1g0464 606 Gene3D - 340 599 IPR038770 -
Aed1g0464 606 Pfam Sodium Bile acid symporter family 414 517 IPR002657 GO:0016020
Aed1g0464 606 Gene3D - 12 101 - -
Aed1g0464 606 Gene3D - 110 202 - -
Aed1g0464 606 Pfam Sugar efflux transporter for intercellular exchange 18 100 IPR004316 GO:0016021
Aed1g0464 606 Pfam Sugar efflux transporter for intercellular exchange 110 194 IPR004316 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0464 Aed-Chr1 6374688 6381565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0464 324 606 Organic Solute Cotransporters AT1G78560 57.831 2.52e-122 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0464 K03453 - gmx:100788854 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0464 1 6374688 6381565 Aed4g1211 4 12060330 12063636 ECH
Aed1g0464 1 6374688 6381565 Aed1g0464 1 6374688 6381565 ECH