Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1780 ATGGCACAGAAGAGATTCATAATCGAGGTCGAGAAAGCGAAGGAGGCGAGCGAAGGAAGGCCTTCTAGAGGACCTGTCTATCGCAGCCTCTTCGCGAAGGATGGATTCCCTGCTCCAATCCAAGGTCTCGATTGTTGTTGGGACGTTTTTCGTCAATTCAGTTCTGAATGTTTGCCAGGCAAGTACAACTGGCTAACATACAAAGAAGTATATGACCAGGTGATGAAAGTTGGGAATTCTATCCGCAGCTGTGGTTATGGAGAAGGTATAAAATGTGGTATTTATGGTGCCAATTCTGCAGAATGGATTATGAGCATGCAGGCTTGCAATGCTCATGGACTTTATTGTGTTCCTTTATATGATACCTTGGGTGCTGGGGCGGTAGAGTTTATTATATGCCATGCAGAGGTCTCAATTGCATTTACAGAAGAAAAGAAGATACCTGAGCTATTGAAGACATTTCCAAATGCAACAAAGCATCTCAAGACAATTGTAAGCTTTGGAAAGGTTACCCGTGAACAAAAGCAAGAAGTTGAAAATTTTGGGTTGGCAATATATTCATGGGATGAATTTTTAAAAGTGGTGGGTTACTCATTTCATGGTCAAAATCAGAGTTTTGATCTTCCTATTAAGAAAAGGAGTGACATCTGTACAATAATGTATACTAGTGGAACTACTGGTGACCCCAAGGGAGTGTTGATATCAAATGAGAGTATCATTACTCTCTTAGCTGGGGTTAAGCGACTGTTGGAGAGTGTCAATGAACAATTGACTGAGAAGGATGTATACATATCATACCTTCCACTTGCACATATCTTTGATAGAGTCATTGAGGAGACATTCATATGGCATGGTGCTTCAATAGGTTTCTGGCGTGGGGATGTCAAATTGTTACTTGAAGATATTGGGGAACTAAAACCAACTATTTTTTGTGCTGTTCCCCGTGTGCTTGATAGAGTGTACTCTGGTTTGACACAGAAGATTTCTTCTGGGGGCTTCTTGAAAAAGACATTATTCAACTTTGCTTATTCATATAAGCTGAATAACATGAAGAAAGGGCGTAGACACGGAGAGGCATCTCCACTTCTTGATAAAATTGTGTTTGACAAGGTAAAGCAAGGTTTAGGGGGTAGAGTACGCCTTATTTTGTCTGGAGCAGCACCTTTATCTGCACATGTGGAAGGTTACTTACGGGTGGTGACATGTGCTCATGTCTTACAAGGATATGGTTTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAGAAATGCTTGGAACAGTTGGCCCTCCTGTACCAAATGTAGATGTGTGCCTAGAATCTGTTCCTGAAATGGGATATGATGCCGTAGCAAGTACACCAAGAGGAGAAATTTGTGTTAAGGGAAAAACCTTGTTTGAAGGGTACTACAAACGTGAAGACCTCACCAAAGAGGTTCTGATCGATGAATGGTTCCATACAGGGGATATTGGGGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGAAGAAGAATATATTTAAACTTTCACAAGGAGAATATGTTGCTGTCGAAAACCTGGAGAATATTTACAGCCAAGTTTCTTCTATTGAATCTATATGGGTTTATGGAAACAGTTTCGAGGCCTTCCTTATTGCTGTTGTTAACCCCAGTAAGCAAGCACTTGAACATTGGGCGCAAGAAAATGGTATATCCATGGACTTCAATTCTCTCTGTGAAGATGCTCGAGCAAAAAGTTACTTACTTGAAGAGCTCTCAAAGATTGCAAAGGAAAAGAAGTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACCCAATTGCATTTGACATGGAACGTGACCTTATCACTCCAACTTATAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAGAATGTGATTGACAACATGTACAAGAGTGGGAAGTAA 1953 0.406 MAQKRFIIEVEKAKEASEGRPSRGPVYRSLFAKDGFPAPIQGLDCCWDVFRQFSSECLPGKYNWLTYKEVYDQVMKVGNSIRSCGYGEGIKCGIYGANSAEWIMSMQACNAHGLYCVPLYDTLGAGAVEFIICHAEVSIAFTEEKKIPELLKTFPNATKHLKTIVSFGKVTREQKQEVENFGLAIYSWDEFLKVVGYSFHGQNQSFDLPIKKRSDICTIMYTSGTTGDPKGVLISNESIITLLAGVKRLLESVNEQLTEKDVYISYLPLAHIFDRVIEETFIWHGASIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRVYSGLTQKISSGGFLKKTLFNFAYSYKLNNMKKGRRHGEASPLLDKIVFDKVKQGLGGRVRLILSGAAPLSAHVEGYLRVVTCAHVLQGYGLTETCAGTFVSLPNEIEMLGTVGPPVPNVDVCLESVPEMGYDAVASTPRGEICVKGKTLFEGYYKREDLTKEVLIDEWFHTGDIGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENLENIYSQVSSIESIWVYGNSFEAFLIAVVNPSKQALEHWAQENGISMDFNSLCEDARAKSYLLEELSKIAKEKKLKGFEFIKAVHLDPIAFDMERDLITPTYKKKRPQLLKYYQNVIDNMYKSGK 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1780 650 SUPERFAMILY Acetyl-CoA synthetase-like 57 647 - -
Aed11g1780 650 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 3 54 - -
Aed11g1780 650 ProSitePatterns Putative AMP-binding domain signature. 219 230 IPR020845 -
Aed11g1780 650 Gene3D - 51 508 IPR042099 -
Aed11g1780 650 PANTHER LONG CHAIN ACYL-COA SYNTHETASE 3 246 648 - -
Aed11g1780 650 CDD LC-FACS_euk 60 647 IPR045311 GO:0004467|GO:0006631
Aed11g1780 650 PANTHER LONG CHAIN ACYL-COA SYNTHETASE 3 60 245 - -
Aed11g1780 650 PANTHER LONG CHAIN ACYL-COA SYNTHETASE 3 3 54 - -
Aed11g1780 650 Pfam AMP-binding enzyme 59 516 IPR000873 -
Aed11g1780 650 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 60 245 - -
Aed11g1780 650 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 246 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1780 Aed-Chr11 21184801 21194611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1780 3 648 Acyl Lipid Metabolism Gene Families AT4G23850 72.424 0.0 1016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1780 K01897 - gmx:100814965 1234.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1780 11 21184801 21194611 Aed11g1780 11 21184801 21194611 ECH
Aed11g1780 11 21184801 21194611 Aed5g2360 5 25161696 25166375 PCT