Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1679 ATGGACGAATCATTCGCTCCGCCACCTCCAATGTCGTCTTCTCAGCACGACCACGTCCAACGAATGATAAACTCGAATCGGTACAAGTCACCTTCGAAAACAATCTACTCCGACAGGTTTATTCCGAGCAGATCCGGTTCTAATTTCGATCTCTTCAATCTACCTTCGCGATCAGAGGACAGTTGCAGTTGCAGCCCCTACAGCAGTGCGCTCCGGAGTGCCTTGTTTGGACCAGACACTCCCGATAAATTTGAAAGCCCTAATATATTTCGTTATAAAACGGAGACTCGAAAGTCCATGCATTCTCTCTCACCCACCCCTTTTAGTTACCAGGATGACATTCTCCCTGGTTATGACCACAATCATAAACTTCCTAAACGTTCCCGCAAGATTCTTCCCTCGTCTTTTAAGGTTTTGGACGCACCTGCGCTTCAAGACGATTTTTATCTGAATCTCGTGGATTGGTCCTCCAACAATGTCTTGGCTGTGGCTCTGGAAAACTCTGTAACTAAATTATGTGATTTGGGGATTGACAACTCAGTATGTTCGGTTGGTTGGGCTCCACTTGGTGCCTACCTGGCTGTTGGATCAAACAGCGGTAAAGTCCAGATTTGGGATGTATCTCAAGGCAAGTCAATAAGAACCATGGAGGGTCATCGCTTACGTGTTGGGGCCTTGGCTTGGAGTTCATCTCTTTTGTCTTCTGGAGGCCGGGATAAAAGCATTTATCATCGAGATATACGTGCACAAAATGATTTTGTTAGTAAACTGTGTGGACACAAGTCAGAGGTCTGTGGACTGAAGTGGTCATATGATAATCGTGAATTAGCGTCTGGAGGAAACGACAACAAGTTGCTTGTTTGGAATCAAAACTTAAACCAACCCATCCTGAAGTTCTGTGAGCATACAGCAGCTGTCAAAGCTATTGCATGGTCTCCGCATGTAAATGGACTTCTTGCATCTGGAGGTGGAACTGCGGACAGAAACATTCGTTTTTGGAATACAACTACAAGCTCACACTTAAATTGTATTGACACTGGAAGTCAGGTTTGTAACCTTGTGTGGTCTAAAAATGTGAATGAACTAGTAAGCACACATGGTTACTCACAAAACCAGATAATAGTCTGGAAATACCCCACCATGTCAAAGCTTGCAACTCTTACAGGCCACACTTATAGGGTTCTTTATCTTGCTATTTCTCCTGACGGACAGACTATTGTCACTGGAGCTGGCGATGAAACTCTCAGGTTTTGGAATGTATTTCCTTCACAGAAATCACAGAATACTGAGAGTGAAATTGGAGCATCATCTTTTGGTAGAACCATCATTAGATGA 1335 0.4404 MDESFAPPPPMSSSQHDHVQRMINSNRYKSPSKTIYSDRFIPSRSGSNFDLFNLPSRSEDSCSCSPYSSALRSALFGPDTPDKFESPNIFRYKTETRKSMHSLSPTPFSYQDDILPGYDHNHKLPKRSRKILPSSFKVLDAPALQDDFYLNLVDWSSNNVLAVALENSVTKLCDLGIDNSVCSVGWAPLGAYLAVGSNSGKVQIWDVSQGKSIRTMEGHRLRVGALAWSSSLLSSGGRDKSIYHRDIRAQNDFVSKLCGHKSEVCGLKWSYDNRELASGGNDNKLLVWNQNLNQPILKFCEHTAAVKAIAWSPHVNGLLASGGGTADRNIRFWNTTTSSHLNCIDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWKYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSQKSQNTESEIGASSFGRTIIR 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1679 444 MobiDBLite consensus disorder prediction 8 39 - -
Aed11g1679 444 Gene3D - 125 423 IPR015943 GO:0005515
Aed11g1679 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 174 215 IPR001680 GO:0005515
Aed11g1679 444 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 257 289 - -
Aed11g1679 444 Pfam WD domain, G-beta repeat 294 334 IPR001680 GO:0005515
Aed11g1679 444 Pfam WD domain, G-beta repeat 254 289 IPR001680 GO:0005515
Aed11g1679 444 Pfam WD domain, G-beta repeat 383 419 IPR001680 GO:0005515
Aed11g1679 444 Pfam Anaphase-promoting complex subunit 4 WD40 domain 178 230 IPR024977 -
Aed11g1679 444 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 387 420 - -
Aed11g1679 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 387 428 IPR001680 GO:0005515
Aed11g1679 444 ProSitePatterns Trp-Asp (WD) repeats signature. 406 420 IPR019775 -
Aed11g1679 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 289 IPR001680 GO:0005515
Aed11g1679 444 MobiDBLite consensus disorder prediction 1 39 - -
Aed11g1679 444 SMART WD40_4 209 246 IPR001680 GO:0005515
Aed11g1679 444 SMART WD40_4 250 289 IPR001680 GO:0005515
Aed11g1679 444 SMART WD40_4 292 334 IPR001680 GO:0005515
Aed11g1679 444 SMART WD40_4 168 206 IPR001680 GO:0005515
Aed11g1679 444 SMART WD40_4 380 419 IPR001680 GO:0005515
Aed11g1679 444 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 10 444 IPR033010 GO:0010997|GO:0097027|GO:1904668
Aed11g1679 444 PANTHER PROTEIN FIZZY-RELATED 1 10 444 - -
Aed11g1679 444 SUPERFAMILY WD40 repeat-like 153 429 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1679 Aed-Chr11 20519756 20523708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1679 193 422 Miscellaneous Gene Families AT5G08390 21.030 8.07e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1679 K03364 - gmx:100785726 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1679 11 20519756 20523708 Aed11g1679 11 20519756 20523708 ECH
Aed6g0463 6 4037853 4043887 Aed11g1679 11 20519756 20523708 PCT