Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1336 ATGGGTCACCCCTCTCTCCGCCTCTGCTCGTGGCTGTTGCGAATCTCAGATCTAAACACAACCAAGTTGAGTTCTGTGAATCTTGGAACATCAAAGCTAACTTCCTTTCTTCCCTCTCTCTCTTTCTCCACTGTGACAAGTACCAACTTCGATTTCAAGGCCTACATGCTCGCCAAGGTCAGCACAGTCAACCAAGCATTGGACGCAGCCATTCCCCTAAGGGAACCAAGGAAGCTCCACGAAGCCATGCGCTACTCTCTCTTCGCCGGCGGCAAAAGGGTCAGCCCGCTCGTCGGCGGCACCCAGCTCACCGCCCTCCCCGCGGCGTGCGCCGTCGAGATGGTCCACACCATGTCACTCATCCACGACGACTTGCCCTGCATGGACAACGACGACCTCCGCCGCGGAAAACCAACTAACCACAAGGTCTTCGGCGACGATGTGGCGGTCCTCGCCGGCGACGCTCTCCTCGCGTTGGCTTTCGAGCAAGTGGCGGTGTCGACGAAGGGCGTGGCGGCAGAGAGGGTGCGCAATCGGGAGTTAGCGAAATCGATCGGCGCGGAAGGGTGTGTTGCGGGACAAGTGGTGGATATAGAATCGGAAGGGGTGTCGGATGTGGGTTTAGAGAGGCTAGAATTCATTCATTTGCACAAAACGGCGGCGTTGCTGGAAGCCGCGGCTGTGTTGGGGGTACTAGTGGGAGGTGGGTCGGACGAGGAGGCTGAGAAATTAAGGAAGTACGGCAGGTGCATTGGGTGGTTGTACCAGGTTGTCGATGACATTCTTGATGTTACCAAGTCCTCCGAGGAATTGGGGAAGACGGCGGGGAAGGATTTGGTGGCTGATAAAGTCACTTACCCAAAGCTTTTGGGGATTCATAAGTCTAAGGAGTTTGCTGGAAAATTGATGCAGGATGCGAATGAACTATTGTCTGCCTTCGATCCCCAAAAGGCGGCTCCACTGTTTGCTTTAACTAATTACATTGCTCACAGGCAACATTGA 1002 0.5489 MGHPSLRLCSWLLRISDLNTTKLSSVNLGTSKLTSFLPSLSFSTVTSTNFDFKAYMLAKVSTVNQALDAAIPLREPRKLHEAMRYSLFAGGKRVSPLVGGTQLTALPAACAVEMVHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGDDVAVLAGDALLALAFEQVAVSTKGVAAERVRNRELAKSIGAEGCVAGQVVDIESEGVSDVGLERLEFIHLHKTAALLEAAAVLGVLVGGGSDEEAEKLRKYGRCIGWLYQVVDDILDVTKSSEELGKTAGKDLVADKVTYPKLLGIHKSKEFAGKLMQDANELLSAFDPQKAAPLFALTNYIAHRQH 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1336 333 SFLD Isoprenoid Synthase Type I 54 331 - -
Aed11g1336 333 SFLD Polyprenyl Transferase Like 54 331 - -
Aed11g1336 333 Gene3D Farnesyl Diphosphate Synthase 44 333 IPR008949 -
Aed11g1336 333 CDD Trans_IPPS_HT 75 331 IPR000092 GO:0008299
Aed11g1336 333 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 44 332 - -
Aed11g1336 333 Pfam Polyprenyl synthetase 78 297 IPR000092 GO:0008299
Aed11g1336 333 ProSitePatterns Polyprenyl synthases signature 1. 120 136 IPR033749 -
Aed11g1336 333 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE 7, CHLOROPLASTIC 44 332 - -
Aed11g1336 333 ProSitePatterns Polyprenyl synthases signature 2. 251 263 IPR033749 -
Aed11g1336 333 SUPERFAMILY Terpenoid synthases 53 313 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1336 Aed-Chr11 18183537 18190161 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1336 K13789 - gmx:100778289 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1336 11 18183537 18190161 Aed11g1336 11 18183537 18190161 ECH
Aed11g1336 11 18183537 18190161 Aed7g0979 7 7508334 7509452 PCT