Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1167 ATGTCGAAGCTGCTTCTACCCACTTCTTCTTCTTCTCCCCTCACCATCACCTCCATTCACCGCTTCAACACTCCATCTTCCTCCGCCGCTTCCACCCTTCAACAATTTCAATGCCGATTCTCCCTCCGCTCCAATCACGTGCGTAGAAGAAGAACAAGAAGAAGAGACCTCTCCCTTTCCCTTTCCCTCCGCGCTTTCGATTCGAATTCCAATGCCGAAAGCGTTAAAGAAGAAGTGGAGGAGAAAGAAGACAGTGTTAGGATTGCCGATGAGGAATATCCGAGCGGCGAGTTCGATTTCGAACCTGTTACCGGATGGGGAAGCTTCCTCGTCAAGCTTAAGATGCTTGTCGCGTTCCCCTGGGAGCGTGTTCGCAAGGGAAGCGTCCTCACAATGAAGCTTCGCGGCCAGATATCTGATCAAGTGAAGAGTAGGTTCTCTTCAGGACTTTCTCTGCCTCAAATTTGTGAGAATCTTTTGAAAGCAGCATATGATCCTCGTGTTTCTGGGATCTATCTTCATATTGATAGTTTAAATTGCGGGTGGGGTAAAGTAGAGGAAATTCGAAGGCATATATTGGATTTCAAAAAATCAGGAAAATTTGCTTTGGCTTATGTCCCTTTAGGTCAAGAAAAAGAGTATTACCTTGCATCTGCATGTGAAGAGATATATGCTCCACCCAGTGCTTACTTTTCTTTGTTTGGATTGACTGTTCAAGCCTCATTCCTCAGAGGTATTTTAGATAACATAGGAATTGAACCACAGGTGGAAAGGATTGGAAAATACAAAAGTGCGGGAGATCAACTAGCTCGAAGAACCATGTCTGAAGAAAATTGTGAGATGCTGACTGCATTGCTTGATAATATCTATACAAATTGGCTGGATAAAGTCTCTTCGGCCAAAGGAAAAACAAGAGAAGATATTGAGAACTTCATAAATGAAGGTGTTTATCAAGTGGACAAGCTGAAAGAAGAGGGGCTCATATCAAATATAAACTATGATGATGAGATTACTGCCATGTTGAAGGAGAGACTTGGAGTAAAATCAGATAAAGATCTGCCTATGGTGGATTACAGGAAGTACTCTAGAGTTAGGAAATGGACTGTTGGAATATCCGGTGGTAAAGAACTTATAGCCATTATCCGAGCTTCAGGGAGTATTAGTCGTGTAGAGGGTCAATTAAGTGTCTCTAGCTCAGGGATCATTGCAGAGAAGTTCATTGAGAAGATTCGCACTGTCCGAGAGTCAAAAAAATTTAAGGCTGCTATCATCAGAATTGACAGTCCTGGAGGTGATGCTCTTGCTTCTGATTTGATGTGGAGAGAAATTCGGCTTTTGGCTGCTTCAAAACCAGTCGTTGCTTCAATGTCTGACGTGGCAGCCAGTGGAGGGTACTACATGGCAATGGGAGCTGATGTTATTGTTGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGGAAAATTTAACCTGGGGAAACTGTATGAGAAGATCGGCTTTAACAAAGAAATTATATCAAGGGGAAGATATGCTGAGCTCGTTGCTGCGGAACAACGTCCTTTCAGACCAGATGAAGCAGAGCTATTTGCCAAATCTGCTCAGCATGCTTATAAACAATTTCGAGACAAGGCAGCTTCATCCAGATCAATGACTGTAGAAAAGATGGAGGAGGTTGCACAGGGAAGGGTTTGGACTGGTAAAGATGCAGCTTCGCGTGGTTTAGTTGATGCTATTGGTGGCCTATCTCGAGCTATTGCCATAGCGAAAATGAAGGCTGATATACCTCAAGACAGTCAGGTTACACTTGTGGAGATCTCCAGACCCAGCCCTTCTCTACCCGAGATTTTGTTAGGTGTAGGGAGTTCCATTGTTGGAGCTGACAGAACAGTGAAGGAACTGCTTCAGGGCTTGACATTTTCCGATGGAGTTCAAGCCCGGATGGATGGAATCATGTTTCAGACATTGGAAGATTATCCTTTTGGCAACCCCATTTTCTCAATAATAAAAGATTACCTCAGTTCCCTGTAG 2037 0.4374 MSKLLLPTSSSSPLTITSIHRFNTPSSSAASTLQQFQCRFSLRSNHVRRRRTRRRDLSLSLSLRAFDSNSNAESVKEEVEEKEDSVRIADEEYPSGEFDFEPVTGWGSFLVKLKMLVAFPWERVRKGSVLTMKLRGQISDQVKSRFSSGLSLPQICENLLKAAYDPRVSGIYLHIDSLNCGWGKVEEIRRHILDFKKSGKFALAYVPLGQEKEYYLASACEEIYAPPSAYFSLFGLTVQASFLRGILDNIGIEPQVERIGKYKSAGDQLARRTMSEENCEMLTALLDNIYTNWLDKVSSAKGKTREDIENFINEGVYQVDKLKEEGLISNINYDDEITAMLKERLGVKSDKDLPMVDYRKYSRVRKWTVGISGGKELIAIIRASGSISRVEGQLSVSSSGIIAEKFIEKIRTVRESKKFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVVASMSDVAASGGYYMAMGADVIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGRYAELVAAEQRPFRPDEAELFAKSAQHAYKQFRDKAASSRSMTVEKMEEVAQGRVWTGKDAASRGLVDAIGGLSRAIAIAKMKADIPQDSQVTLVEISRPSPSLPEILLGVGSSIVGADRTVKELLQGLTFSDGVQARMDGIMFQTLEDYPFGNPIFSIIKDYLSSL 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1167 678 Pfam Peptidase family S49 446 596 IPR002142 GO:0006508|GO:0008233
Aed10g1167 678 Pfam Peptidase family S49 197 347 IPR002142 GO:0006508|GO:0008233
Aed10g1167 678 Gene3D - 520 642 - -
Aed10g1167 678 PIRSF Protease_4_SppA 54 677 IPR004634 GO:0006465|GO:0008233|GO:0016021
Aed10g1167 678 SUPERFAMILY ClpP/crotonase 116 331 IPR029045 -
Aed10g1167 678 Coils Coil 72 92 - -
Aed10g1167 678 CDD S49_SppA_67K_type 130 343 - -
Aed10g1167 678 PANTHER PROTEASE 4 64 677 - -
Aed10g1167 678 Gene3D - 374 519 - -
Aed10g1167 678 CDD S49_Sppa_N_C 378 592 IPR002142 GO:0006508|GO:0008233
Aed10g1167 678 SUPERFAMILY ClpP/crotonase 378 583 IPR029045 -
Aed10g1167 678 Gene3D - 127 269 - -
Aed10g1167 678 Gene3D - 270 363 - -
Aed10g1167 678 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 378 592 IPR004635 GO:0006508|GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1167 Aed-Chr10 10997514 11010471 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1167 K04773 - gmx:100781522 1130.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1167 10 10997514 11010471 Aed10g1167 10 10997514 11010471 ECH
Aed6g1664 6 20452652 20458731 Aed10g1167 10 10997514 11010471 PCT