Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1027 ATGTTGGAGGGTCCAACCTTTCTTGTTTCAAGGGACTTACCAAGCTCATGTGAGCAAGAGACCAGGTGGATTTACAATTCCTTCTGTGTTATGGAGGTCGCAAACAATAAGCGTCGACTGGAACTAGAGGAAGAAGCTGTATTGACAAAGTCATGCAAGCTTTCAGATGCTCCTGAGGAAGGGGAAACAAAGAAGATCATTCAAGATCTTTCCCTATCCATTAATCAAGCGAATGACCAAAACCATGCAAGTGATCAGTCAGACTCAAGTTCGCTAATCTTCCAACTTGGTCGGGACATCTCAATTAATTGTCTCCTACGATGCTCGAGGTCTGACTATGGTTCGATTGCCTCGTTGAACCAAAGTTTTCGATCTCTTGTTCGGACTGGAGAGCTTTATAGGCTGAGGCGGCAGATGGGTATCATAGAGCATTGGGTTTACTTCTCTTGTAATCTCCCTGAATGGGAGGCATTTGATCCAAACACCCGTCGATGGATGCGCTTGCCTAGAATGCCTTCTAATGAATGTTTTATCTGTTCAGATAAGGAGTCATTGGCTGTGGGTACGGAGCTTCTTGTTTTTGGAAAGGAAATAATGTCTCCTGTCATATACAGATATAGCATTTTGATGAACTCGTGGTCATCTGGAATGATAATGAATGTTCCTAGATGCTTGTTCGGTTCTGCAAGCCTTGGAGAAGTCGCCATATTAGCTGGTGGTTGTGATCCACGGGGCAACATCTTGAGCTCAGCTGAGCTTTATAACTCAGAAACTGGAACGTGGGAGCTTCTCCCAAACATGAATAAAGCAAGGAAAATGTGTTCTGGTGTATTTATAGATGGGAAATTTTATGTGATTGGTGGGATTGGAGTAGGTAACTCAAAGCAGCTAACAAGTGGTGAGGAGTTTGATCTGCAGACAAAAAAATGGCGAGAAATACCCAACATGTTCCCTGGACGAAATGGAGGATCTGAGGAAACTGAGGTATCAGCTGCTGCTGAGGCACCTCCTTTGGTTGCAGTTGTAAATAATGTATTGTATTCTGCAGATTATTCCCAACAAGAGGTAAGGAGATATGATAAAGACAATAATTTGTGGGTCACTATTGGAAGATTACCTGACCGCATAGTCTCAATGAACGGCTGGGGATTAGCCTTCCGTGCATGTGGAAATCGCCTAATTGTTATCGGTGGGCCAAGAGCTTTAGATGGAAGGGTAATTGAGATCAATGCTTGTGTCCCAGGTGAAGGTGTGCTAGAGTGGAACCTGCTTGCTAGCCGACAATCAGGGAGCTTTGTGTATAACTGTGCAGTGATGGGATGCTGA 1326 0.4412 MLEGPTFLVSRDLPSSCEQETRWIYNSFCVMEVANNKRRLELEEEAVLTKSCKLSDAPEEGETKKIIQDLSLSINQANDQNHASDQSDSSSLIFQLGRDISINCLLRCSRSDYGSIASLNQSFRSLVRTGELYRLRRQMGIIEHWVYFSCNLPEWEAFDPNTRRWMRLPRMPSNECFICSDKESLAVGTELLVFGKEIMSPVIYRYSILMNSWSSGMIMNVPRCLFGSASLGEVAILAGGCDPRGNILSSAELYNSETGTWELLPNMNKARKMCSGVFIDGKFYVIGGIGVGNSKQLTSGEEFDLQTKKWREIPNMFPGRNGGSEETEVSAAAEAPPLVAVVNNVLYSADYSQQEVRRYDKDNNLWVTIGRLPDRIVSMNGWGLAFRACGNRLIVIGGPRALDGRVIEINACVPGEGVLEWNLLASRQSGSFVYNCAVMGC 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1027 441 Pfam Kelch motif 270 316 IPR006652 GO:0005515
Aed10g1027 441 Pfam Kelch motif 222 268 IPR006652 GO:0005515
Aed10g1027 441 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 10 441 - -
Aed10g1027 441 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 10 441 - -
Aed10g1027 441 SMART kelc_smart 234 281 IPR006652 GO:0005515
Aed10g1027 441 SMART kelc_smart 282 334 IPR006652 GO:0005515
Aed10g1027 441 Gene3D - 134 416 IPR015915 GO:0005515
Aed10g1027 441 SUPERFAMILY Kelch motif 150 438 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1027 Aed-Chr10 9056468 9057793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1027 90 334 EF-hand Containing Proteins AT4G39560 27.778 2.34e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1027 - - gmx:100788507 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1027 10 9056468 9057793 Aed6g1561 6 19702491 19703711 ECH
Aed10g1027 10 9056468 9057793 Aed10g1027 10 9056468 9057793 ECH