Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0949 ATGAAAGGATTGAATATGCCGGGAATTGTTACTAACGGGGTTCATGATGAAGGTGGAAGTAGTGAGATGAATGGGAATCATGATTCCTCCTCTAAGGAGCCCTTGAATCTGGTTAAGTCCCCAAGGGGTGGTTCCGTGAGTCCGCGAGGAGGCCAGGGCAATGGTGCTGCTAATAATTTTGGGGGTGATGGGGTGGATGAGCCCTCCATTGAACAGCTTTATGAGAATGTGTGTGACATGCAGAGTTCCGATCAGTCGCCGTCAAGGCAAAGTTTTGGATCTGATGGTGATGAGTCTAGAATTGATTCTGAGCTGAGGCATCTGGTTGGAGGACGGATGAGGGAGGTGGAGATAATGGAGGAGGAGGTTGGGGAGGGGAAAGGGCCGGAAGGGAGTTCAAGTAGTGAAATATCTTCTGCATTGGGTGGCTTGTCCAATGATAAGAAGGTGGATCAGATGGAAGAGATTCAGGAGGTTCAGCCTGCAGCTACTACTAGTTCTGGTTCCTCACAAAAATCTGTCAAAGCATCGAATTCACGGGTGGAACCTGACACTTTGGCCAAATCAACATCCAAGGGAAAAAGTCCTCTTACAAAAGCTCCTATTCCGAGAAAGAATGATAAGCCTTTGAGGAAACAGGTTAGTGGAGTTACCGGCGTGAAGAATACGAAGATTTCTCCTGTGGGTAAGTCAGTGTCACTGACACGGAACCGAGCTGAGAGTATGGCTGAGTCTGCAATAGAAAGACCTGAGCGGGCACAGTTGTTGTTAAAGCAAGCAAGAGATCTGATTTCAGCAGGAGATAATTCGCAGAAGGCCCTTGACTTAGCTCTTCAAGCAATGAAACTGTTTGAGAAGCTTGGTAATGGGAAACCAAGTTTGGAGCTGGTTATGTCTTTACATGTTACAGCAGCAATATATTGCAGCTTGGGTCAATATGGTGAGGCAATTCCAGTTCTTGAGCGGTCAATTGAGATTCCTGTTGTTGAAGAAAGTCAACAACATGCCCTTGCTAAATTTGCTGGTCACATGCAACTGGGAGACACCTATGCCATGCTGGGCCAGCTTGAGAATTCAATAATGTGCTACACCAATGGGTTAGAAGTTCAGAAGCAGGTTTTGGGAGAGACAGACCCAAGGATTGGTGAAACTTGTCGGTATGTGGCTGAAGCTAATGTTCAAGCTTTGCAATTTGATGAAGCAGAGAAGCTGTGTCAAATGGCTCTTGACATTCATAAAGCAAATAATTCAGCTCCATGTCTTGAAGAGGCAGCTGATAGGAGGCTCATGGGCCTTATATGTGATACAAAGGGAAATCATGAAGCAGCTCTTGAGCATCTTGTTTTAGCCAGCATGGCAATGGTTAATAACGGCCAGGAAGCAGAAGTGGCATCTGTTGACTGCAGCATTGGAGACACATACTTATCCTTGTCTCGGTATGATGAGGCTGTCTTTGCATATCAGAAAGCGCTAACAGTTTTCAAGACTAGCAAAGGGGAGAATCATCCAGCAGCAGGATCAGTTTTTGTACGTTTGGCCGAATTGTATAACAGGACAGGGAAGATAAGGGAATCAAAATCATATTGCGAGAGTGCACTTAAAATATACGAGAATCCAATGCCTGGAGTTCCTCCGGAGGAGATTGCCAGTGGTCTTACGAATGTCTCAACTATCTATGAGTCAATGAATGAGCTTGAACAGGCACTCAAGTTATTGCAGAAAGCACTGGAGATATACAATGATACCCCCGGTCAGCAAAGCACAATAGCTGGAATTGAAGCTCAGATGGGAGTCATGTACTACATGTTGGGAAACTATTCTGAATCTTACAACACTTTGAAGAAGGCTATTTCAAAGCTTCGTGCTATAGGTGAAAAAAAATCATCTTTCTTTGGTATTGCTCTTAATCAAATGGGACTTGCCTGTGTGCAGTGTTATGCATTGAGTGAGGCTACTGAATTATTTGAAGAGGCAAAGAGTATTTTGGAACAACAATATGGACCGTATCACCCAGAAACACTTGGGGTATATAGTAATCTTGCTGGCACATATGACGCAATTGGCAGGCTGGATGATGCAATTCATATTCTGGAGTACGTAGTTAACACGAGGGAGGAAAAACTCGGGACTGCAAATCCTGAGGTGGATGATGAAAAGAGAAGGTTGGCTGAATTGTTAAAGGAAGCAGGTAGAGTTCGGAGTAGAAAAGCAAGGTCACTTGAGAACCTTCTTGACAGCAATGGTCACGCTGCAAAGAACGTTGTCATCAGGGCGTGA 2277 0.448 MKGLNMPGIVTNGVHDEGGSSEMNGNHDSSSKEPLNLVKSPRGGSVSPRGGQGNGAANNFGGDGVDEPSIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELRHLVGGRMREVEIMEEEVGEGKGPEGSSSSEISSALGGLSNDKKVDQMEEIQEVQPAATTSSGSSQKSVKASNSRVEPDTLAKSTSKGKSPLTKAPIPRKNDKPLRKQVSGVTGVKNTKISPVGKSVSLTRNRAESMAESAIERPERAQLLLKQARDLISAGDNSQKALDLALQAMKLFEKLGNGKPSLELVMSLHVTAAIYCSLGQYGEAIPVLERSIEIPVVEESQQHALAKFAGHMQLGDTYAMLGQLENSIMCYTNGLEVQKQVLGETDPRIGETCRYVAEANVQALQFDEAEKLCQMALDIHKANNSAPCLEEAADRRLMGLICDTKGNHEAALEHLVLASMAMVNNGQEAEVASVDCSIGDTYLSLSRYDEAVFAYQKALTVFKTSKGENHPAAGSVFVRLAELYNRTGKIRESKSYCESALKIYENPMPGVPPEEIASGLTNVSTIYESMNELEQALKLLQKALEIYNDTPGQQSTIAGIEAQMGVMYYMLGNYSESYNTLKKAISKLRAIGEKKSSFFGIALNQMGLACVQCYALSEATELFEEAKSILEQQYGPYHPETLGVYSNLAGTYDAIGRLDDAIHILEYVVNTREEKLGTANPEVDDEKRRLAELLKEAGRVRSRKARSLENLLDSNGHAAKNVVIRA 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0949 758 Coils Coil 555 582 - -
Aed10g0949 758 Gene3D Tetratricopeptide repeat domain 226 331 IPR011990 GO:0005515
Aed10g0949 758 Gene3D Tetratricopeptide repeat domain 628 747 IPR011990 GO:0005515
Aed10g0949 758 Gene3D Tetratricopeptide repeat domain 332 449 IPR011990 GO:0005515
Aed10g0949 758 MobiDBLite consensus disorder prediction 17 36 - -
Aed10g0949 758 SUPERFAMILY TPR-like 278 589 IPR011990 GO:0005515
Aed10g0949 758 SUPERFAMILY TPR-like 468 702 IPR011990 GO:0005515
Aed10g0949 758 ProSiteProfiles TPR repeat profile. 464 497 IPR019734 GO:0005515
Aed10g0949 758 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 6 747 - -
Aed10g0949 758 MobiDBLite consensus disorder prediction 1 211 - -
Aed10g0949 758 MobiDBLite consensus disorder prediction 158 196 - -
Aed10g0949 758 Pfam Tetratricopeptide repeat 463 538 - -
Aed10g0949 758 Pfam Tetratricopeptide repeat 634 699 - -
Aed10g0949 758 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 6 747 - -
Aed10g0949 758 Coils Coil 715 735 - -
Aed10g0949 758 SMART tpr_5 340 373 IPR019734 GO:0005515
Aed10g0949 758 SMART tpr_5 674 707 IPR019734 GO:0005515
Aed10g0949 758 SMART tpr_5 297 330 IPR019734 GO:0005515
Aed10g0949 758 SMART tpr_5 549 582 IPR019734 GO:0005515
Aed10g0949 758 SMART tpr_5 506 539 IPR019734 GO:0005515
Aed10g0949 758 SMART tpr_5 382 415 IPR019734 GO:0005515
Aed10g0949 758 SMART tpr_5 632 665 IPR019734 GO:0005515
Aed10g0949 758 SMART tpr_5 424 457 IPR019734 GO:0005515
Aed10g0949 758 SMART tpr_5 464 497 IPR019734 GO:0005515
Aed10g0949 758 SMART tpr_5 590 623 IPR019734 GO:0005515
Aed10g0949 758 MobiDBLite consensus disorder prediction 75 94 - -
Aed10g0949 758 ProSiteProfiles TPR repeat profile. 549 582 IPR019734 GO:0005515
Aed10g0949 758 MobiDBLite consensus disorder prediction 95 127 - -
Aed10g0949 758 Pfam Tetratricopeptide repeat 549 581 - -
Aed10g0949 758 Gene3D Tetratricopeptide repeat domain 450 627 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0949 Aed-Chr10 8175055 8179262 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0949 - - gmx:100783201 1211.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0949 10 8175055 8179262 Aed6g1461 6 18919856 18923619 ECH
Aed10g0949 10 8175055 8179262 Aed10g0949 10 8175055 8179262 ECH
Aed6g1461 6 18919856 18923619 Aed10g0949 10 8175055 8179262 PCT