Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0225 ATGGCTGCTGAAGTATATTACCAGGCTATTGGCACTTTGCAGACACATTCTTATCTGAATAACTCAAATCATCACCAAAAGCATCAAAAAAATTTAGTAAGATTGGTGTTGGCTAAGGATTTTGTCAGCAGTAATGGCTTGTCAGCGAGAAGAAGTAACCGCTCTGGCCAGCGGAATAGCAGTGCAATTCAATCTCTAGCTTCGCAAACACCAGTGGTTGATCCAGTGCTGTACCCTTCAAGAAGCAACGCTGGTGACACTAAAAAGAAATCAAATGAAGCAGCTTTAATCCTTATCCGGCACGGTGAGTCGTTATGGAATGAGAAAAACTTATTCACAGGGTGTGTTGATGTCCCTCTAAGCAAAAAGGGTATAGATGAGGCAATTGAAGCTGGAAAAAGAATTAGCAGCATTCCTGTTGATGTCATATTCACATCGGCTTTAATTCGTGCACAAATGACAGCCATGCTTGCTATGACCCAGCACCGTCGTGGGAAGGTCCCTATCATGATGCACAATGAGAGTGAACAAGCAAGGTCATGGAGTCAAGTATATAGTGAAGATACAGAAAAGCAGTCCATTCCAGTCAGAGCAGCTTGGCAACTAAATGAAAGAATGTATGGGGAACTGCAGGGTCTCAATAAGCAAGAAACAGCAGACAGATACGGGAAAGAACAAGTCCATGAGTGGCGACGAAGTTATGACATACCTCCTCCAAATGGTGAAAGTTTGGAAATGTGTGCTGAAAGAGCAGTTGCCTATTTCAGAGACCAAATTGAACCTCAACTTTTATCTGGAAAGAATGTCATGATTTCAGCCCATGGGAATTCATTGAGATCCATTATCATGTACCTTGATAAATTAACTTCCCAAGAGGTCATTAGTTTGGAATTGTCAACTGGAATTCCCATGCTTTACATTTTCAAAGAGGGGAGATTCACTAGGAGGGGGAGTCCCATAGCACCTTCTGAAGCTGGAGTTTATGCGTATACCAAGGCACTAACAACTTTCCTTGTTCCCAGCGTTTGGCTCTTTACAAGCAGAAGTTGGATGACATGGTCCAGTGATAAATTATTATTAGGAAATACATTCACAGTTGAATCACAAAGGGGAAGATGTTTTCAGTGGTACTGTTTCAGGAAATACAATGCACTTGTTCTAAAGCTAGGTTGTTTTTGA 1179 0.4165 MAAEVYYQAIGTLQTHSYLNNSNHHQKHQKNLVRLVLAKDFVSSNGLSARRSNRSGQRNSSAIQSLASQTPVVDPVLYPSRSNAGDTKKKSNEAALILIRHGESLWNEKNLFTGCVDVPLSKKGIDEAIEAGKRISSIPVDVIFTSALIRAQMTAMLAMTQHRRGKVPIMMHNESEQARSWSQVYSEDTEKQSIPVRAAWQLNERMYGELQGLNKQETADRYGKEQVHEWRRSYDIPPPNGESLEMCAERAVAYFRDQIEPQLLSGKNVMISAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGRFTRRGSPIAPSEAGVYAYTKALTTFLVPSVWLFTSRSWMTWSSDKLLLGNTFTVESQRGRCFQWYCFRKYNALVLKLGCF 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0225 392 SUPERFAMILY Phosphoglycerate mutase-like 96 312 IPR029033 -
Aed10g0225 392 MobiDBLite consensus disorder prediction 47 67 - -
Aed10g0225 392 CDD HP_PGM_like 96 311 IPR013078 -
Aed10g0225 392 PANTHER PHOSPHOGLYCERATE MUTASE 1, HISTIDINE PHOSPHATASE SUPERFAMILY-RELATED 1 336 - -
Aed10g0225 392 Hamap 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 93 320 IPR005952 GO:0004619|GO:0006096|GO:0016868
Aed10g0225 392 Pfam Histidine phosphatase superfamily (branch 1) 191 300 IPR013078 -
Aed10g0225 392 Pfam Histidine phosphatase superfamily (branch 1) 96 163 IPR013078 -
Aed10g0225 392 PANTHER PHOSPHOGLYCERATE MUTASE 1 336 IPR005952 GO:0004619|GO:0006096|GO:0016868
Aed10g0225 392 Gene3D - 85 322 IPR029033 -
Aed10g0225 392 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 98 107 IPR001345 GO:0003824
Aed10g0225 392 SMART PGAM_5 95 281 IPR013078 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0225 Aed-Chr10 1817289 1820619 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0225 K01834 - gmx:100802621 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0225 10 1817289 1820619 Aed10g0225 10 1817289 1820619 ECH
Aed3g1637 3 20952378 20956549 Aed10g0225 10 1817289 1820619 PCT