Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0223 ATGAGTGTGGATTTGAACAAAACTGCCTCCAACGGTCATGAAAAAAGGCTAATATCACCAGAACAGCAGGCAAAGATCAATGAGGTGAGAGGGTTGATAGGGCCACTATCAGATAAGGAATCTTTGTACTGTTCTGATGATGCCTCCATCTCAAGGTATTTAAGGTCACGAAATTGGAATGTCAAGAAAGCAGCTCAAATGTTGAAAAAGTGCCTAAAATGGAGAACAGAATACAAACCTGAAGAGATACGCTGGGAAGAGGTTGCTGCTGTAGCAGAGACATGGATGCTGTATATGACAAATTATTGTGACAAGTATGGGAGACCAGTGATTGTAATGAGACCTCGTAACAAGCAGAAATCAACACCAGAAGAGGACGTGATAAAGTATTTAGTATACTGCTTGGAGAATGCCATTATAAATCTGCCACCACACGAGGAAGAGTTGGTCTGGCTGGTAGATTTCCAGGGTGGCAAGTTGTCAGATTTATCATTCAAGACATCACGTGAAACTGCCCGTATAATACAGGACTATTATCCAAAGCACCTGGGTTTGATAATGTTGTATAAAGCACCTAGGATCTTCCAACCACTCTTCTCGATGCTAAGGCCCTTTATAGAGACTGAGCTTTACAATAAAATCAAGTTTGGCTATTCGGACGACCACAACACAAAGAAGATGTTGGAGGATTTGTTTGATGTGGATAAAGTTGAATCTGCATTTGGTGGGAATGATAACACAGGATTTGACATCAATAAGTATGCTGAGAGAATGAAAGAGGATGATAATAGGAAACACTCTTTCTGGACATAG 813 0.4071 MSVDLNKTASNGHEKRLISPEQQAKINEVRGLIGPLSDKESLYCSDDASISRYLRSRNWNVKKAAQMLKKCLKWRTEYKPEEIRWEEVAAVAETWMLYMTNYCDKYGRPVIVMRPRNKQKSTPEEDVIKYLVYCLENAIINLPPHEEELVWLVDFQGGKLSDLSFKTSRETARIIQDYYPKHLGLIMLYKAPRIFQPLFSMLRPFIETELYNKIKFGYSDDHNTKKMLEDLFDVDKVESAFGGNDNTGFDINKYAERMKEDDNRKHSFWT 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0223 270 Gene3D - 3 269 IPR036865 -
Aed10g0223 270 PANTHER CRAL-TRIO LIPID BINDING DOMAIN, CRAL/TRIO DOMAIN-CONTAINING PROTEIN-RELATED 1 270 - -
Aed10g0223 270 Pfam CRAL/TRIO domain 94 243 IPR001251 -
Aed10g0223 270 SUPERFAMILY CRAL/TRIO domain 85 261 IPR036865 -
Aed10g0223 270 SMART sec14_4 91 246 IPR001251 -
Aed10g0223 270 SUPERFAMILY CRAL/TRIO N-terminal domain 18 87 IPR036273 -
Aed10g0223 270 SMART CRAL_TRIO_N_2 46 71 IPR011074 -
Aed10g0223 270 CDD SEC14 91 244 IPR001251 -
Aed10g0223 270 Pfam CRAL/TRIO, N-terminal domain 25 70 IPR011074 -
Aed10g0223 270 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 87 249 IPR001251 -
Aed10g0223 270 PANTHER GH16843P 1 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0223 Aed-Chr10 1804493 1805672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0223 49 214 Acyl Lipid Metabolism Gene Families AT5G47730 25.668 1.39e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0223 - - gmx:100802091 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1638 3 20954600 20960245 Aed10g0223 10 1804493 1805672 PCT