Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0198 ATGCCACATGCAGTGGTCAAGCATGGTCACAAACTCGTAAGACAACAGGCAATAGGCATAAACAATGAACACACCGTGTTGAATGCGTGTTTCTATTTCATTTCATTGTTTTTTCAGAACAATTTCAACCAACCACCACCAGTACCATTTAATAATATCCCTCCCCTTCTGACTCTCTCCTCTCCAACAACACTACTTACAACCACAACAGATTTCGTGGCATTCCTTCTTCACAAGGTTCGCTTTTTGACCACAAATGTTCCATCTTTATATGCGTGGGACAGTGTTTTGGTTACAATCACAAGCCGTTTTCGTTTTAGTCAGCACCCAAAGATTTCATCAGAGAATCGTGATTTGAAGCCGGCCACCCTTGACGTTACAGTACCCAGTGGTGTGCAGAAGAATTCAAGGGGCAATGTGAGGGTTATGAATCTTGAGAGTCCTGTGAAGACTGGAGTGGAGGAAGCTTATGAAGGGGAAGATGAGCATGAAGAGTCACCTTCCATCAAGAGGGAGTTGTCTGATTTTGATCTCCAAGTCCACGAAGCTGCTGCAAGCAAAGGAGGATATGATCCATCAAATGAAGATATAAAATATCCCAGTTTATCTGAAAACCAAAATAACATTCAATTGGAAGACAAAGACCATAAATACAGCAAAAAGAGTGATGATATAATCCAAAGTGGACATGTTAGTGATCCTGGGATTGGCAAGGCTGACTTTTTGACTTCTCCAAAGCTCAAGAGATCCTGCTCTGACCTGGAAAGAAGGGATGTACTAAGGAAGGCTTCTCATCTCTTTCCACCTTCAAAGTCACAGTCTTTTGAAAATTTGCAGGAATTATCAGCATATCAGATGGTTAATCTAGAAAGCCCCAGGTCTGTGATGACTCACGGCAGTGCTGATAGAGTGATGTTAAAAAAACATTCATCAAGTCAAGTTCTCCCTTCTAGAAGTAAAAGATTGTGGTGGAAGTTGTTCCTCTGGAGCCACAGGAATATACATAGGGTGCAGTTAGGCAAATCGACAACAATACATCCTGCAAGTGCTGCTTTAAAGAGTCAATGTGGGTACTCATCAGACACTCTTGAACCAAAACATGGCGGGGCATTGAGACATGTTGAATTGCCCTCACCCAGCTCATCTTATGGGGAATACTTCCACAACAGCTGCGATGACAGAAATATTGATAAGCAAAGGTGGAGCAGATTTCAAACAGAGAATTTTGGTTTTTGGCCACAAAACCAATGGGTGGCTTTCTCAACAGAATCCTCCTCCTTTAGCAGAGTGGATGAGTGGGTGAAAGATCTTGAAATTCAGCAGCCACCTCCTGAGGATGATTTTGATGATGACAATATTGGAAGCATAGCCTTCCCACCTTCTCCTGATGCTATCCCACAAGCATCCTCAAGCACAGCTCAGTCGGTTCGACATCCTGATGCCAATCTTTCAAAGGAGATATTTTATGCCAATAGTGTGGTTCAGTCCCTGAACCCAACCTCAACTGCAGCTCATATATCAGGAATTGGTATAAAAGCTATCCCGGCTATTTCACACTTCTTCACTCTCCGCTCTGTCAATTTGTCAAGCAATCTCATAGTTCACATCACGCCTGGATTTCTCCCAAAGGGTCTTCATACTCTGAATCTGTCAAGAAACAAAATCAGCACCATTGAGGGGCTCAGAGACTTAACCCGGCTGCGGGAACTTAACTTAAGTTATAATCGCATCTCAAGAATTGGACAAGGGTTATCAAATTGTACCCTCATCAAAGAGCTATATCTTGCGGGAAACAAGATAAGTGATGTTGAGGGCCTACACAGGTTATTGAAGCTAACAGTTCTGGACTTGAGCTTTAACAAGATCGCAACAACAAAAGCATTAGGCCAGCTGGTGGCTAACTACAACTCACTTCAGGCCCTGAATCTGCTTGGAAATCCAATTCAAAGCAACATCAGTGATGAGCAGCTGCGAAAAGCAGTTTGTGGTCTTCTTCCAAAGCTTGTGTACCTGAACAAGCAATCTATCAAGCCTCAAAGGGGACGAGAAATACTCACTGATAGCGTTGCCAAAGCTGCACTTGGGAACAGCAGCCGGAACTCCTACAGAAGAGCAGTGAAGATAGGTGGTGGCCAAGGAGGGTCAAGCTCCTCCAGTGTGCATAGAAGCAGTGCTAGTTCCCAGAAAAGCAGGAACAGGTCAAGGAGCCGAACTAAACATCATTAG 2226 0.4362 MPHAVVKHGHKLVRQQAIGINNEHTVLNACFYFISLFFQNNFNQPPPVPFNNIPPLLTLSSPTTLLTTTTDFVAFLLHKVRFLTTNVPSLYAWDSVLVTITSRFRFSQHPKISSENRDLKPATLDVTVPSGVQKNSRGNVRVMNLESPVKTGVEEAYEGEDEHEESPSIKRELSDFDLQVHEAAASKGGYDPSNEDIKYPSLSENQNNIQLEDKDHKYSKKSDDIIQSGHVSDPGIGKADFLTSPKLKRSCSDLERRDVLRKASHLFPPSKSQSFENLQELSAYQMVNLESPRSVMTHGSADRVMLKKHSSSQVLPSRSKRLWWKLFLWSHRNIHRVQLGKSTTIHPASAALKSQCGYSSDTLEPKHGGALRHVELPSPSSSYGEYFHNSCDDRNIDKQRWSRFQTENFGFWPQNQWVAFSTESSSFSRVDEWVKDLEIQQPPPEDDFDDDNIGSIAFPPSPDAIPQASSSTAQSVRHPDANLSKEIFYANSVVQSLNPTSTAAHISGIGIKAIPAISHFFTLRSVNLSSNLIVHITPGFLPKGLHTLNLSRNKISTIEGLRDLTRLRELNLSYNRISRIGQGLSNCTLIKELYLAGNKISDVEGLHRLLKLTVLDLSFNKIATTKALGQLVANYNSLQALNLLGNPIQSNISDEQLRKAVCGLLPKLVYLNKQSIKPQRGREILTDSVAKAALGNSSRNSYRRAVKIGGGQGGSSSSSVHRSSASSQKSRNRSRSRTKHH 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0198 741 Pfam Leucine Rich repeat 611 622 IPR001611 GO:0005515
Aed10g0198 741 SUPERFAMILY Outer arm dynein light chain 1 512 676 - -
Aed10g0198 741 ProSiteProfiles Leucine-rich repeat profile. 544 565 IPR001611 GO:0005515
Aed10g0198 741 ProSiteProfiles Leucine-rich repeat profile. 589 610 IPR001611 GO:0005515
Aed10g0198 741 PANTHER NISCHARIN RELATED 106 740 - -
Aed10g0198 741 ProSiteProfiles Leucine-rich repeat profile. 566 588 IPR001611 GO:0005515
Aed10g0198 741 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 106 740 - -
Aed10g0198 741 SMART LRR_typ_2 564 587 IPR003591 -
Aed10g0198 741 SMART LRR_typ_2 520 542 IPR003591 -
Aed10g0198 741 SMART LRR_typ_2 609 631 IPR003591 -
Aed10g0198 741 MobiDBLite consensus disorder prediction 711 731 - -
Aed10g0198 741 Pfam Leucine rich repeat 522 577 IPR001611 GO:0005515
Aed10g0198 741 ProSiteProfiles Leucine-rich repeat profile. 611 632 IPR001611 GO:0005515
Aed10g0198 741 Gene3D Ribonuclease Inhibitor 585 681 IPR032675 -
Aed10g0198 741 MobiDBLite consensus disorder prediction 699 741 - -
Aed10g0198 741 Gene3D Ribonuclease Inhibitor 491 584 IPR032675 -
Aed10g0198 741 SMART LRR_sd22_2 542 563 - -
Aed10g0198 741 SMART LRR_sd22_2 587 608 - -
Aed10g0198 741 SMART LRR_sd22_2 609 630 - -
Aed10g0198 741 SMART LRR_sd22_2 564 586 - -
Aed10g0198 741 MobiDBLite consensus disorder prediction 440 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0198 Aed-Chr10 1575326 1579055 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0198 - - gmx:100810094 1080.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0198 10 1575326 1579055 Aed10g0198 10 1575326 1579055 ECH
Aed3g1661 3 21262578 21267628 Aed10g0198 10 1575326 1579055 PCT