Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g01007 ATGGCGGATCAATTATCGAAGGCAGAAGAATACGAGAAGAAAGCAGAGAAGAAGCTGAATGGTTGGGGCTTGTTTGGCTCCAAATATGAGGATGCTGCTGATCTCTTCGATAAAGCTGCCAATTCCTTCAAGCTCGCTAAATCATGGGACAAAGCGGGAGCAACATACCTCAGGTTGGCAAGTTGCCATTTGAAGTTGGAAAGTAAACATGAAGCTGCCCAAGCCTATGTCGATGCTGCTCATTGCTATAAAAAGACTAATATAAATGAGGCTGTAAATTGCCTGGACCATGCTGTGAATCTATTCTGTGATATTGGAAGACTCTCCATGGCTGCTAGATATTTGAAGGAAATTGCTGAATTGTACGAGTCTCAACAGAATATTGAGCAGGCTGTTGTTTACTATGAAAAATCAGCTGATTTTTTCCAAAATGAAGAAGTTACAACTAGTGCAAACCAGTGCAAGCAAAAGGTTGCTCAATATGCTGCCCAGCTAGAACAATATCAAAAATCAATTGACATTTATGAAGCCATAGCTCGCCAGTCTCTCAACAATAACTTGCTGAAGTATGGAGTTAAAGGACATCTTCTTAATGCTGGTATTTGCGAACTCTGTAAAGGGGATCTCGTTGCTATAAACAATGCACTAGAGAGATATCAGGAGCTGGATCCAACATTTTCAGGAACACGAGAATATAGATTTTTGACGGTAAAGTACCAGTTTTGA 726 0.405 MADQLSKAEEYEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYLRLASCHLKLESKHEAAQAYVDAAHCYKKTNINEAVNCLDHAVNLFCDIGRLSMAARYLKEIAELYESQQNIEQAVVYYEKSADFFQNEEVTTSANQCKQKVAQYAAQLEQYQKSIDIYEAIARQSLNNNLLKYGVKGHLLNAGICELCKGDLVAINNALERYQELDPTFSGTREYRFLTVKYQF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g01007 241 SUPERFAMILY TPR-like 6 237 IPR011990 GO:0005515
Adu10g01007 241 Coils Coil 151 178 - -
Adu10g01007 241 Pfam Soluble NSF attachment protein, SNAP 6 235 - -
Adu10g01007 241 Gene3D Tetratricopeptide repeat domain 4 238 IPR011990 GO:0005515
Adu10g01007 241 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 1 235 IPR000744 GO:0006886
Adu10g01007 241 SMART tpr_5 112 145 IPR019734 GO:0005515
Adu10g01007 241 SMART tpr_5 53 86 IPR019734 GO:0005515
Adu10g01007 241 CDD SNAP 19 235 IPR000744 GO:0006886
Adu10g01007 241 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Adu10g01007 241 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Adu10g01007 241 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Adu10g01007 241 PRINTS NSF attachment protein signature 224 241 IPR000744 GO:0006886
Adu10g01007 241 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Adu10g01007 241 PRINTS NSF attachment protein signature 119 136 IPR000744 GO:0006886
Adu10g01007 241 PANTHER ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 1 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g01007 Adu-Chr10 17748896 17752165 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g01007 K15296 - gmx:100814639 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu10g01007 10 17748896 17752165 Adu07g00723 07 8454984 8463067 ECH
Adu10g01007 10 17748896 17752165 Adu10g01007 10 17748896 17752165 ECH
Adu10g01007 10 17748896 17752165 Adu07g00723 07 8454984 8463067 PCT