Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g00328 ATGGCTTCCGTGCCCTTCTTCTCTCGTTTCCATTTGCTTCCTTCAAACCAATCATCATTTCCACATTCAACCTTTCACCTTCACCTTCACAACCCACAACACCCATTCATCACCAATGCAAACCCCTCTTCTTCTGATCACAAAGCTCAAGACTTTGCCACAAACCCAGTCCAGGGAATCGGTGGCTCTCCGAAGAAGAAGAAGGCCAAGGAGAAGGTTCACTGGGTTTGCAGCAATTGCGGCTACAGTGCAGGGCAATGGTGGGGTGTGTGTAGATCATGTGGTGAAGCTGGAACCATGAAAGAGTTTCATGAAACCAAAGGAAGTGACAACAAGGTGAGTGGTTTTGCTGTTATGGATGGTGCTGTTGGGTCATGGCTACCTCACCAGGAAGAAACTCAGTTGCGTCCATTGAGATTGGCTGAGGTCAATAGAGGTCTTGATCAGCTTCATTGGAGGATTCCATTAAACGGTCCTTGTGGAAATGAAGTTTCTAGAGTGCTTGGTGGAGGCCTTGTACCAGGCTCTTTGACTTTAGTTGGTGGCGATCCTGGAGTCGGGAAAAGTACTCTGCTGCTGCAGATTGCTGCAATGATCACAGAAGAGTGCAATGATAGCGAAGCATCTCCAGTTGTGTACGTCTCTGGTGAAGAGAGTGTTGAGCAAATAGGCAATAGGGCGGATCGCCTTGGCATTACAGAAGACATTTATTTATATTCAAGTAATGATATTGAGGATATATTGAAAAAAGTTCAGTATCTCTCCCCTCGGGCTCTGGTTATTGATTCAATACAAACTGTTTATTTGAAAGGAATAATGGGAAGTCCTGGAGGGATTATGCAGGTGAAAGAATGCACTTCAACTTTGCTGCGATTTGCAAAGACAACAAACATCCCCGTTCTTTTGATTGGCCATGTGACTAAATCTGGAGACATAGCTGGACCTCGTGTCTTGGAGCATATTGTAGACGTTGTTCTGTATATGGAAGGGGAGAAGTACTCCACCCATCGTATGCTTCGAGCTGTGAAAAATCGATTTGGATCCACTGATGAGCTTGGAGTTTTTGAGATGTCACATTCAGGACTTCAGGCTGTTTCAAATGCGAGTGAAATGTTTCTCAGTGAGCAACATTTAGATTCGGAAATATTAGCGGGGCTAGCTGTTGCTGTGATAATGGATGGCTCCCGAACATTCCTTATTGAAATTCAGGCACTTTGTCTTTCTGGCTCAACTGGTTCAAGGCAAGTTAATGGGATCCATGCAAATAGAGCTGATATGATCATATCTGTTCTTATAAAGCAAGCAGGTCTTCGCCTACAAGAAAATGCTGTGTTTTTGAATGTTGTTAGTGGGTTGACACTTACTGAGACTGCAGGAGATCTTGCAATAGCAGCTGCGATTTGTAGCAGTTTCTTGGAGGTCCCAATACCAAATGACATTGCATTCATCGGTGAAATTGGACTTGGTGGCGAGCTTCGCATGGTTCCTAGAATGGAGAAAAGGGTATACACGGTAGCCAAATTGGGTTACAGAATGTGCATAGTGCCAAAAACAGCTGAAAAAACTTTAGGAAATGAAGGTCTAGAAAAGATGACACTTGTGGGTTGCAGGAATCTGAAAGAAGTTATTTACACAGTCTTTCCCAAGATCACAGGTTCAAGCCATGGAAACAGCCACTAA 1680 0.4411 MASVPFFSRFHLLPSNQSSFPHSTFHLHLHNPQHPFITNANPSSSDHKAQDFATNPVQGIGGSPKKKKAKEKVHWVCSNCGYSAGQWWGVCRSCGEAGTMKEFHETKGSDNKVSGFAVMDGAVGSWLPHQEETQLRPLRLAEVNRGLDQLHWRIPLNGPCGNEVSRVLGGGLVPGSLTLVGGDPGVGKSTLLLQIAAMITEECNDSEASPVVYVSGEESVEQIGNRADRLGITEDIYLYSSNDIEDILKKVQYLSPRALVIDSIQTVYLKGIMGSPGGIMQVKECTSTLLRFAKTTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYSTHRMLRAVKNRFGSTDELGVFEMSHSGLQAVSNASEMFLSEQHLDSEILAGLAVAVIMDGSRTFLIEIQALCLSGSTGSRQVNGIHANRADMIISVLIKQAGLRLQENAVFLNVVSGLTLTETAGDLAIAAAICSSFLEVPIPNDIAFIGEIGLGGELRMVPRMEKRVYTVAKLGYRMCIVPKTAEKTLGNEGLEKMTLVGCRNLKEVIYTVFPKITGSSHGNSH 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g00328 559 ProSiteProfiles RecA family profile 1. 150 306 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Adu09g00328 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 357 IPR027417 -
Adu09g00328 559 SMART AAA_5 174 332 IPR003593 -
Adu09g00328 559 Pfam Subunit ChlI of Mg-chelatase 428 518 - -
Adu09g00328 559 Gene3D - 382 555 IPR014721 -
Adu09g00328 559 TIGRFAM sms: DNA repair protein RadA 69 530 IPR004504 GO:0003684|GO:0005524|GO:0006281
Adu09g00328 559 PANTHER DNA REPAIR PROTEIN RADA 65 548 - -
Adu09g00328 559 Pfam AAA domain 167 310 - -
Adu09g00328 559 PANTHER DNA REPAIR-LIKE PROTEINRADA 65 548 - -
Adu09g00328 559 Pfam Rubredoxin metal binding domain 75 102 IPR041166 -
Adu09g00328 559 PRINTS DNA repair protein radA signature 166 194 - -
Adu09g00328 559 PRINTS DNA repair protein radA signature 301 329 - -
Adu09g00328 559 PRINTS DNA repair protein radA signature 77 101 - -
Adu09g00328 559 PRINTS DNA repair protein radA signature 336 362 - -
Adu09g00328 559 PRINTS DNA repair protein radA signature 411 434 - -
Adu09g00328 559 PRINTS DNA repair protein radA signature 262 286 - -
Adu09g00328 559 SUPERFAMILY Ribosomal protein S5 domain 2-like 343 547 IPR020568 -
Adu09g00328 559 Gene3D - 163 363 IPR027417 -
Adu09g00328 559 MobiDBLite consensus disorder prediction 40 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g00328 Adu-Chr9 3501525 3506466 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g00328 K04485 - gmx:100794165 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu09g00328 09 3501525 3506466 Adu09g00328 09 3501525 3506466 ECH
Adu07g01759 07 52773394 52780952 Adu09g00328 09 3501525 3506466 PCT